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Cluster: Rep_2843_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2843_c_1 Rep_2843_c_1_14 17524 19083 + 2.A.2.5.1
CAZyme Rep_2843_c_1 Rep_2843_c_1_15 19198 20793 + GH28
CAZyme Rep_2843_c_1 Rep_2843_c_1_16 20925 23090 + CE19 | CE8
pfam Rep_2843_c_1 Rep_2843_c_1_17 23159 23827 + Lipase_GDSL | Lipase_GDSL_2
CAZyme Rep_2843_c_1 Rep_2843_c_1_18 23935 25173 + GH105
Gene ID: Rep_2843_c_1_14
Type: TC
Location: 17524 - 19083 (+)
Gene ID: Rep_2843_c_1_15
Type: CAZyme
Location: 19198 - 20793 (+)
Gene ID: Rep_2843_c_1_16
Type: CAZyme
Location: 20925 - 23090 (+)
Gene ID: Rep_2843_c_1_17
Type: pfam
Location: 23159 - 23827 (+)
Gene ID: Rep_2843_c_1_18
Type: CAZyme
Location: 23935 - 25173 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2843_c_1_18 vegan > omnivore 1.12225 0.00701

🧭 Explore Read Mapping of CGC

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