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Cluster: Rep_2839_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2839_c_43 Rep_2839_c_43_30 28020 29441 - GH1
TC Rep_2839_c_43 Rep_2839_c_43_31 29517 31301 - 4.A.3.1.1
TF Rep_2839_c_43 Rep_2839_c_43_32 31577 32587 + LacI
TC Rep_2839_c_43 Rep_2839_c_43_33 32760 34520 - 4.A.3.1.1
CAZyme Rep_2839_c_43 Rep_2839_c_43_34 34697 36139 - GH1
TF Rep_2839_c_43 Rep_2839_c_43_35 36481 37518 + LacI
CAZyme Rep_2839_c_43 Rep_2839_c_43_36 37786 39225 - GH1
TC Rep_2839_c_43 Rep_2839_c_43_37 39292 41067 - 4.A.3.1.1
TF Rep_2839_c_43 Rep_2839_c_43_38 41425 42429 + LacI
TC Rep_2839_c_43 Rep_2839_c_43_39 42644 42982 + 4.A.3.1.2
Gene ID: Rep_2839_c_43_30
Type: CAZyme
Location: 28020 - 29441 (-)
Gene ID: Rep_2839_c_43_31
Type: TC
Location: 29517 - 31301 (-)
Gene ID: Rep_2839_c_43_32
Type: TF
Location: 31577 - 32587 (+)
Gene ID: Rep_2839_c_43_33
Type: TC
Location: 32760 - 34520 (-)
Gene ID: Rep_2839_c_43_34
Type: CAZyme
Location: 34697 - 36139 (-)
Gene ID: Rep_2839_c_43_35
Type: TF
Location: 36481 - 37518 (+)
Gene ID: Rep_2839_c_43_36
Type: CAZyme
Location: 37786 - 39225 (-)
Gene ID: Rep_2839_c_43_37
Type: TC
Location: 39292 - 41067 (-)
Gene ID: Rep_2839_c_43_38
Type: TF
Location: 41425 - 42429 (+)
Gene ID: Rep_2839_c_43_39
Type: TC
Location: 42644 - 42982 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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