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Cluster: Rep_2839_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2839_c_43 Rep_2839_c_43_11 9763 10206 + 4.A.6.1.16
pfam Rep_2839_c_43 Rep_2839_c_43_12 10206 10487 + YajC
TC Rep_2839_c_43 Rep_2839_c_43_13 10524 11006 + 4.A.6.1.4
TC Rep_2839_c_43 Rep_2839_c_43_14 11097 11897 + 4.A.6.1.4
TC Rep_2839_c_43 Rep_2839_c_43_15 11887 12969 + 4.A.6.1.4
TF Rep_2839_c_43 Rep_2839_c_43_16 13154 13885 + GntR
STP Rep_2839_c_43 Rep_2839_c_43_17 14000 15166 + SIS | SIS
CAZyme Rep_2839_c_43 Rep_2839_c_43_18 15284 16453 + CE9
Gene ID: Rep_2839_c_43_11
Type: TC
Location: 9763 - 10206 (+)
Gene ID: Rep_2839_c_43_12
Type: pfam
Location: 10206 - 10487 (+)
Gene ID: Rep_2839_c_43_13
Type: TC
Location: 10524 - 11006 (+)
Gene ID: Rep_2839_c_43_14
Type: TC
Location: 11097 - 11897 (+)
Gene ID: Rep_2839_c_43_15
Type: TC
Location: 11887 - 12969 (+)
Gene ID: Rep_2839_c_43_16
Type: TF
Location: 13154 - 13885 (+)
Gene ID: Rep_2839_c_43_17
Type: STP
Location: 14000 - 15166 (+)
Gene ID: Rep_2839_c_43_18
Type: CAZyme
Location: 15284 - 16453 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2839_c_43_12 vegan > omnivore 1.02909 0.00863

🧭 Explore Read Mapping of CGC

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