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Cluster: Rep_2839_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2839_c_34 Rep_2839_c_34_3 2822 5272 - 4.A.1.1.8
TF Rep_2839_c_34 Rep_2839_c_34_4 5497 6216 + GntR
TC Rep_2839_c_34 Rep_2839_c_34_5 6523 7839 + 3.A.1.1.45
TC Rep_2839_c_34 Rep_2839_c_34_6 7927 8781 + 3.A.1.1.45
TC Rep_2839_c_34 Rep_2839_c_34_7 8781 9620 + 3.A.1.1.45
TC Rep_2839_c_34 Rep_2839_c_34_8 9689 10888 + 3.A.1.1.22
CAZyme Rep_2839_c_34 Rep_2839_c_34_9 11424 13691 - GT35
CAZyme Rep_2839_c_34 Rep_2839_c_34_10 13820 15325 - GH77
Gene ID: Rep_2839_c_34_3
Type: TC
Location: 2822 - 5272 (-)
Gene ID: Rep_2839_c_34_4
Type: TF
Location: 5497 - 6216 (+)
Gene ID: Rep_2839_c_34_5
Type: TC
Location: 6523 - 7839 (+)
Gene ID: Rep_2839_c_34_6
Type: TC
Location: 7927 - 8781 (+)
Gene ID: Rep_2839_c_34_7
Type: TC
Location: 8781 - 9620 (+)
Gene ID: Rep_2839_c_34_8
Type: TC
Location: 9689 - 10888 (+)
Gene ID: Rep_2839_c_34_9
Type: CAZyme
Location: 11424 - 13691 (-)
Gene ID: Rep_2839_c_34_10
Type: CAZyme
Location: 13820 - 15325 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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