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Cluster: Rep_2829_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2829_c_1 Rep_2829_c_1_136 162391 163560 - CE9
STP Rep_2829_c_1 Rep_2829_c_1_137 163678 164844 - SIS | SIS
TF Rep_2829_c_1 Rep_2829_c_1_138 164959 165690 - GntR
TC Rep_2829_c_1 Rep_2829_c_1_139 165876 166958 - 4.A.6.1.4
TC Rep_2829_c_1 Rep_2829_c_1_140 166948 167748 - 4.A.6.1.4
TC Rep_2829_c_1 Rep_2829_c_1_141 167839 168321 - 4.A.6.1.4
pfam Rep_2829_c_1 Rep_2829_c_1_142 168358 168639 - YajC
TC Rep_2829_c_1 Rep_2829_c_1_143 168639 169082 - 4.A.6.1.16
Gene ID: Rep_2829_c_1_136
Type: CAZyme
Location: 162391 - 163560 (-)
Gene ID: Rep_2829_c_1_137
Type: STP
Location: 163678 - 164844 (-)
Gene ID: Rep_2829_c_1_138
Type: TF
Location: 164959 - 165690 (-)
Gene ID: Rep_2829_c_1_139
Type: TC
Location: 165876 - 166958 (-)
Gene ID: Rep_2829_c_1_140
Type: TC
Location: 166948 - 167748 (-)
Gene ID: Rep_2829_c_1_141
Type: TC
Location: 167839 - 168321 (-)
Gene ID: Rep_2829_c_1_142
Type: pfam
Location: 168358 - 168639 (-)
Gene ID: Rep_2829_c_1_143
Type: TC
Location: 168639 - 169082 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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