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Cluster: Rep_2829_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2829_c_1 Rep_2829_c_1_112 134859 135197 - 4.A.3.1.2
TF Rep_2829_c_1 Rep_2829_c_1_113 135411 136415 - LacI
TC Rep_2829_c_1 Rep_2829_c_1_114 136773 138548 + 4.A.3.1.1
CAZyme Rep_2829_c_1 Rep_2829_c_1_115 138615 140054 + GH1
TF Rep_2829_c_1 Rep_2829_c_1_116 140316 141353 - LacI
CAZyme Rep_2829_c_1 Rep_2829_c_1_117 141695 143137 + GH1
TC Rep_2829_c_1 Rep_2829_c_1_118 143314 145074 + 4.A.3.1.1
TF Rep_2829_c_1 Rep_2829_c_1_119 145409 146410 - LacI
TC Rep_2829_c_1 Rep_2829_c_1_120 146695 148473 + 4.A.3.1.1
CAZyme Rep_2829_c_1 Rep_2829_c_1_121 148549 149970 + GH1
NULL(UNKNOWN) Rep_2829_c_1 Rep_2829_c_1_122 150266 150532 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_2829_c_1 Rep_2829_c_1_123 150522 150827 + ParE_toxin
TC Rep_2829_c_1 Rep_2829_c_1_124 151188 152882 - 4.A.3.1.1
Gene ID: Rep_2829_c_1_112
Type: TC
Location: 134859 - 135197 (-)
Gene ID: Rep_2829_c_1_113
Type: TF
Location: 135411 - 136415 (-)
Gene ID: Rep_2829_c_1_114
Type: TC
Location: 136773 - 138548 (+)
Gene ID: Rep_2829_c_1_115
Type: CAZyme
Location: 138615 - 140054 (+)
Gene ID: Rep_2829_c_1_116
Type: TF
Location: 140316 - 141353 (-)
Gene ID: Rep_2829_c_1_117
Type: CAZyme
Location: 141695 - 143137 (+)
Gene ID: Rep_2829_c_1_118
Type: TC
Location: 143314 - 145074 (+)
Gene ID: Rep_2829_c_1_119
Type: TF
Location: 145409 - 146410 (-)
Gene ID: Rep_2829_c_1_120
Type: TC
Location: 146695 - 148473 (+)
Gene ID: Rep_2829_c_1_121
Type: CAZyme
Location: 148549 - 149970 (+)
Gene ID: Rep_2829_c_1_122
Type:
Location: 150266 - 150532 (+)
Gene ID: Rep_2829_c_1_123
Type: pfam
Location: 150522 - 150827 (+)
Gene ID: Rep_2829_c_1_124
Type: TC
Location: 151188 - 152882 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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