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Cluster: Rep_2829_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2829_c_8 Rep_2829_c_8_12 15648 17024 - GH13_20
TC Rep_2829_c_8 Rep_2829_c_8_13 17179 18375 - 2.A.1.2.18
TC Rep_2829_c_8 Rep_2829_c_8_14 18499 20859 - 9.A.8.1.6
NULL(UNKNOWN) Rep_2829_c_8 Rep_2829_c_8_15 20981 21301 - NULL(UNKNOWN)
[View Structural Homologs]
peptidase Rep_2829_c_8 Rep_2829_c_8_16 21349 22248 - S09.UPW
TC Rep_2829_c_8 Rep_2829_c_8_17 22493 23056 + 4.A.1.2.6
pfam Rep_2829_c_8 Rep_2829_c_8_18 23238 24641 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) Rep_2829_c_8 Rep_2829_c_8_19 24891 25676 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2829_c_8 Rep_2829_c_8_20 25837 26817 + 3.A.1.34.1
TC Rep_2829_c_8 Rep_2829_c_8_21 27022 27945 + 3.A.1.34.1
TC Rep_2829_c_8 Rep_2829_c_8_22 27938 28732 + 3.A.1.34.1
Gene ID: Rep_2829_c_8_12
Type: CAZyme
Location: 15648 - 17024 (-)
Gene ID: Rep_2829_c_8_13
Type: TC
Location: 17179 - 18375 (-)
Gene ID: Rep_2829_c_8_14
Type: TC
Location: 18499 - 20859 (-)
Gene ID: Rep_2829_c_8_15
Type:
Location: 20981 - 21301 (-)
Gene ID: Rep_2829_c_8_16
Type: peptidase
Location: 21349 - 22248 (-)
Gene ID: Rep_2829_c_8_17
Type: TC
Location: 22493 - 23056 (+)
Gene ID: Rep_2829_c_8_18
Type: pfam
Location: 23238 - 24641 (+)
Gene ID: Rep_2829_c_8_19
Type:
Location: 24891 - 25676 (+)
Gene ID: Rep_2829_c_8_20
Type: TC
Location: 25837 - 26817 (+)
Gene ID: Rep_2829_c_8_21
Type: TC
Location: 27022 - 27945 (+)
Gene ID: Rep_2829_c_8_22
Type: TC
Location: 27938 - 28732 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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