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Cluster: Rep_2829_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2829_c_0 Rep_2829_c_0_11 15164 16846 + 2.A.66.4.4
pfam Rep_2829_c_0 Rep_2829_c_0_12 16853 18793 + GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC Rep_2829_c_0 Rep_2829_c_0_13 19157 20770 + 3.A.1.5.27
TC Rep_2829_c_0 Rep_2829_c_0_14 20928 21884 + 3.A.1.5.38
TC Rep_2829_c_0 Rep_2829_c_0_15 21888 23903 + 3.A.1.5.25
TC Rep_2829_c_0 Rep_2829_c_0_16 23904 24731 + 3.A.1.5.27
CAZyme Rep_2829_c_0 Rep_2829_c_0_17 24863 25789 + CE7
Gene ID: Rep_2829_c_0_11
Type: TC
Location: 15164 - 16846 (+)
Gene ID: Rep_2829_c_0_12
Type: pfam
Location: 16853 - 18793 (+)
Gene ID: Rep_2829_c_0_13
Type: TC
Location: 19157 - 20770 (+)
Gene ID: Rep_2829_c_0_14
Type: TC
Location: 20928 - 21884 (+)
Gene ID: Rep_2829_c_0_15
Type: TC
Location: 21888 - 23903 (+)
Gene ID: Rep_2829_c_0_16
Type: TC
Location: 23904 - 24731 (+)
Gene ID: Rep_2829_c_0_17
Type: CAZyme
Location: 24863 - 25789 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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