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Cluster: Rep_2828_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2828_c_1 Rep_2828_c_1_52 61342 62511 - CE9
STP Rep_2828_c_1 Rep_2828_c_1_53 62630 63796 - SIS | SIS
TF Rep_2828_c_1 Rep_2828_c_1_54 63911 64642 - GntR
TC Rep_2828_c_1 Rep_2828_c_1_55 64827 65909 - 4.A.6.1.4
TC Rep_2828_c_1 Rep_2828_c_1_56 65899 66699 - 4.A.6.1.4
TC Rep_2828_c_1 Rep_2828_c_1_57 66790 67272 - 4.A.6.1.4
pfam Rep_2828_c_1 Rep_2828_c_1_58 67309 67590 - YajC
TC Rep_2828_c_1 Rep_2828_c_1_59 67590 68033 - 4.A.6.1.16
Gene ID: Rep_2828_c_1_52
Type: CAZyme
Location: 61342 - 62511 (-)
Gene ID: Rep_2828_c_1_53
Type: STP
Location: 62630 - 63796 (-)
Gene ID: Rep_2828_c_1_54
Type: TF
Location: 63911 - 64642 (-)
Gene ID: Rep_2828_c_1_55
Type: TC
Location: 64827 - 65909 (-)
Gene ID: Rep_2828_c_1_56
Type: TC
Location: 65899 - 66699 (-)
Gene ID: Rep_2828_c_1_57
Type: TC
Location: 66790 - 67272 (-)
Gene ID: Rep_2828_c_1_58
Type: pfam
Location: 67309 - 67590 (-)
Gene ID: Rep_2828_c_1_59
Type: TC
Location: 67590 - 68033 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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