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Cluster: Rep_2828_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2828_c_1 Rep_2828_c_1_33 38583 38921 - 4.A.3.1.2
TF Rep_2828_c_1 Rep_2828_c_1_34 39136 40140 - LacI
TC Rep_2828_c_1 Rep_2828_c_1_35 40496 42271 + 4.A.3.1.1
CAZyme Rep_2828_c_1 Rep_2828_c_1_36 42338 43777 + GH1
TF Rep_2828_c_1 Rep_2828_c_1_37 44053 45090 - LacI
CAZyme Rep_2828_c_1 Rep_2828_c_1_38 45432 46874 + GH1
TC Rep_2828_c_1 Rep_2828_c_1_39 47051 48811 + 4.A.3.1.1
TF Rep_2828_c_1 Rep_2828_c_1_40 49146 50156 - LacI
TC Rep_2828_c_1 Rep_2828_c_1_41 50432 52189 + 4.A.3.1.1
CAZyme Rep_2828_c_1 Rep_2828_c_1_42 52265 53686 + GH1
TF Rep_2828_c_1 Rep_2828_c_1_43 53881 54645 - HTH_DeoR
sulfatase Rep_2828_c_1 Rep_2828_c_1_44 54852 55904 + S1_4
TC Rep_2828_c_1 Rep_2828_c_1_45 56230 56712 - 4.A.6.1.5
Gene ID: Rep_2828_c_1_33
Type: TC
Location: 38583 - 38921 (-)
Gene ID: Rep_2828_c_1_34
Type: TF
Location: 39136 - 40140 (-)
Gene ID: Rep_2828_c_1_35
Type: TC
Location: 40496 - 42271 (+)
Gene ID: Rep_2828_c_1_36
Type: CAZyme
Location: 42338 - 43777 (+)
Gene ID: Rep_2828_c_1_37
Type: TF
Location: 44053 - 45090 (-)
Gene ID: Rep_2828_c_1_38
Type: CAZyme
Location: 45432 - 46874 (+)
Gene ID: Rep_2828_c_1_39
Type: TC
Location: 47051 - 48811 (+)
Gene ID: Rep_2828_c_1_40
Type: TF
Location: 49146 - 50156 (-)
Gene ID: Rep_2828_c_1_41
Type: TC
Location: 50432 - 52189 (+)
Gene ID: Rep_2828_c_1_42
Type: CAZyme
Location: 52265 - 53686 (+)
Gene ID: Rep_2828_c_1_43
Type: TF
Location: 53881 - 54645 (-)
Gene ID: Rep_2828_c_1_44
Type: sulfatase
Location: 54852 - 55904 (+)
Gene ID: Rep_2828_c_1_45
Type: TC
Location: 56230 - 56712 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2828_c_1_37 vegetarian > omnivore 1.02160 0.01867

🧭 Explore Read Mapping of CGC

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