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Cluster: Rep_2828_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2828_c_31 Rep_2828_c_31_3 3244 5694 - 4.A.1.1.8
NULL(UNKNOWN) Rep_2828_c_31 Rep_2828_c_31_4 5716 5835 + NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_2828_c_31 Rep_2828_c_31_5 5919 6638 + GntR
TC Rep_2828_c_31 Rep_2828_c_31_6 6945 8261 + 3.A.1.1.45
TC Rep_2828_c_31 Rep_2828_c_31_7 8349 9203 + 3.A.1.1.45
TC Rep_2828_c_31 Rep_2828_c_31_8 9203 10042 + 3.A.1.1.45
TC Rep_2828_c_31 Rep_2828_c_31_9 10111 11310 + 3.A.1.1.22
CAZyme Rep_2828_c_31 Rep_2828_c_31_10 11930 14197 - GT35
CAZyme Rep_2828_c_31 Rep_2828_c_31_11 14327 15832 - GH77
Gene ID: Rep_2828_c_31_3
Type: TC
Location: 3244 - 5694 (-)
Gene ID: Rep_2828_c_31_4
Type:
Location: 5716 - 5835 (+)
Gene ID: Rep_2828_c_31_5
Type: TF
Location: 5919 - 6638 (+)
Gene ID: Rep_2828_c_31_6
Type: TC
Location: 6945 - 8261 (+)
Gene ID: Rep_2828_c_31_7
Type: TC
Location: 8349 - 9203 (+)
Gene ID: Rep_2828_c_31_8
Type: TC
Location: 9203 - 10042 (+)
Gene ID: Rep_2828_c_31_9
Type: TC
Location: 10111 - 11310 (+)
Gene ID: Rep_2828_c_31_10
Type: CAZyme
Location: 11930 - 14197 (-)
Gene ID: Rep_2828_c_31_11
Type: CAZyme
Location: 14327 - 15832 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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