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Cluster: Rep_2828_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2828_c_25 Rep_2828_c_25_11 15569 16945 - GH13_20
TC Rep_2828_c_25 Rep_2828_c_25_12 17412 18608 - 2.A.1.2.18
TC Rep_2828_c_25 Rep_2828_c_25_13 18730 21090 - 9.A.8.1.6
peptidase Rep_2828_c_25 Rep_2828_c_25_14 21503 22405 - S09.UPW
TC Rep_2828_c_25 Rep_2828_c_25_15 22650 23213 + 4.A.1.2.6
pfam Rep_2828_c_25 Rep_2828_c_25_16 23394 24797 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) Rep_2828_c_25 Rep_2828_c_25_17 25047 25832 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2828_c_25 Rep_2828_c_25_18 25993 26973 + 3.A.1.34.1
TC Rep_2828_c_25 Rep_2828_c_25_19 27178 28101 + 3.A.1.34.1
TC Rep_2828_c_25 Rep_2828_c_25_20 28094 28888 + 3.A.1.34.1
Gene ID: Rep_2828_c_25_11
Type: CAZyme
Location: 15569 - 16945 (-)
Gene ID: Rep_2828_c_25_12
Type: TC
Location: 17412 - 18608 (-)
Gene ID: Rep_2828_c_25_13
Type: TC
Location: 18730 - 21090 (-)
Gene ID: Rep_2828_c_25_14
Type: peptidase
Location: 21503 - 22405 (-)
Gene ID: Rep_2828_c_25_15
Type: TC
Location: 22650 - 23213 (+)
Gene ID: Rep_2828_c_25_16
Type: pfam
Location: 23394 - 24797 (+)
Gene ID: Rep_2828_c_25_17
Type:
Location: 25047 - 25832 (+)
Gene ID: Rep_2828_c_25_18
Type: TC
Location: 25993 - 26973 (+)
Gene ID: Rep_2828_c_25_19
Type: TC
Location: 27178 - 28101 (+)
Gene ID: Rep_2828_c_25_20
Type: TC
Location: 28094 - 28888 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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