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Cluster: Rep_2828_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2828_c_21 Rep_2828_c_21_10 13610 15292 + 2.A.66.4.4
pfam Rep_2828_c_21 Rep_2828_c_21_11 15299 17239 + GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC Rep_2828_c_21 Rep_2828_c_21_12 17605 19218 + 3.A.1.5.27
TC Rep_2828_c_21 Rep_2828_c_21_13 19374 20330 + 3.A.1.5.38
TC Rep_2828_c_21 Rep_2828_c_21_14 20334 22349 + 3.A.1.5.25
TC Rep_2828_c_21 Rep_2828_c_21_15 22350 23177 + 3.A.1.5.27
CAZyme Rep_2828_c_21 Rep_2828_c_21_16 23309 24235 + CE7
Gene ID: Rep_2828_c_21_10
Type: TC
Location: 13610 - 15292 (+)
Gene ID: Rep_2828_c_21_11
Type: pfam
Location: 15299 - 17239 (+)
Gene ID: Rep_2828_c_21_12
Type: TC
Location: 17605 - 19218 (+)
Gene ID: Rep_2828_c_21_13
Type: TC
Location: 19374 - 20330 (+)
Gene ID: Rep_2828_c_21_14
Type: TC
Location: 20334 - 22349 (+)
Gene ID: Rep_2828_c_21_15
Type: TC
Location: 22350 - 23177 (+)
Gene ID: Rep_2828_c_21_16
Type: CAZyme
Location: 23309 - 24235 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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