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Cluster: Rep_2827_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2827_c_6 Rep_2827_c_6_8 5646 7988 - 3.A.3.5.15
STP Rep_2827_c_6 Rep_2827_c_6_9 8399 10483 - Pkinase
STP Rep_2827_c_6 Rep_2827_c_6_10 10655 11617 - FHA
TC Rep_2827_c_6 Rep_2827_c_6_11 12216 14477 + 1.I.1.1.3
STP Rep_2827_c_6 Rep_2827_c_6_12 15096 15857 + Fer4
TC Rep_2827_c_6 Rep_2827_c_6_13 16202 16714 + 4.A.1.2.5
pfam Rep_2827_c_6 Rep_2827_c_6_14 16733 17587 + PRD | PRD | CAT_RBD
TC Rep_2827_c_6 Rep_2827_c_6_15 17687 19303 + 4.A.1.1.3
CAZyme Rep_2827_c_6 Rep_2827_c_6_16 19307 20689 + GH4
Gene ID: Rep_2827_c_6_8
Type: TC
Location: 5646 - 7988 (-)
Gene ID: Rep_2827_c_6_9
Type: STP
Location: 8399 - 10483 (-)
Gene ID: Rep_2827_c_6_10
Type: STP
Location: 10655 - 11617 (-)
Gene ID: Rep_2827_c_6_11
Type: TC
Location: 12216 - 14477 (+)
Gene ID: Rep_2827_c_6_12
Type: STP
Location: 15096 - 15857 (+)
Gene ID: Rep_2827_c_6_13
Type: TC
Location: 16202 - 16714 (+)
Gene ID: Rep_2827_c_6_14
Type: pfam
Location: 16733 - 17587 (+)
Gene ID: Rep_2827_c_6_15
Type: TC
Location: 17687 - 19303 (+)
Gene ID: Rep_2827_c_6_16
Type: CAZyme
Location: 19307 - 20689 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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