dbCAN Logo

Cluster: Rep_2827_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2827_c_41 Rep_2827_c_41_3 2300 4750 - 4.A.1.1.8
NULL(UNKNOWN) Rep_2827_c_41 Rep_2827_c_41_4 4772 4891 + NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_2827_c_41 Rep_2827_c_41_5 4975 5694 + GntR
TC Rep_2827_c_41 Rep_2827_c_41_6 6001 7317 + 3.A.1.1.45
TC Rep_2827_c_41 Rep_2827_c_41_7 7405 8259 + 3.A.1.1.45
TC Rep_2827_c_41 Rep_2827_c_41_8 8259 9098 + 3.A.1.1.45
TC Rep_2827_c_41 Rep_2827_c_41_9 9167 10366 + 3.A.1.1.22
CAZyme Rep_2827_c_41 Rep_2827_c_41_10 10823 13090 - GT35
CAZyme Rep_2827_c_41 Rep_2827_c_41_11 13219 14724 - GH77
Gene ID: Rep_2827_c_41_3
Type: TC
Location: 2300 - 4750 (-)
Gene ID: Rep_2827_c_41_4
Type:
Location: 4772 - 4891 (+)
Gene ID: Rep_2827_c_41_5
Type: TF
Location: 4975 - 5694 (+)
Gene ID: Rep_2827_c_41_6
Type: TC
Location: 6001 - 7317 (+)
Gene ID: Rep_2827_c_41_7
Type: TC
Location: 7405 - 8259 (+)
Gene ID: Rep_2827_c_41_8
Type: TC
Location: 8259 - 9098 (+)
Gene ID: Rep_2827_c_41_9
Type: TC
Location: 9167 - 10366 (+)
Gene ID: Rep_2827_c_41_10
Type: CAZyme
Location: 10823 - 13090 (-)
Gene ID: Rep_2827_c_41_11
Type: CAZyme
Location: 13219 - 14724 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List