Cluster: Rep_2827_CGC16
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2827
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2827_c_37 | Rep_2827_c_37_2 | 2393 | 2719 | + | 4.A.3.2.7 |
| TC | Rep_2827_c_37 | Rep_2827_c_37_3 | 2766 | 3059 | + | 4.A.3.2.6 |
| TC | Rep_2827_c_37 | Rep_2827_c_37_4 | 3069 | 4418 | + | 4.A.3.2.6 |
| CAZyme | Rep_2827_c_37 | Rep_2827_c_37_5 | 4420 | 5874 | + | GH1 |
Gene ID: Rep_2827_c_37_2
Type: TC
Location: 2393 - 2719 (+)
Type: TC
Location: 2393 - 2719 (+)
Gene ID: Rep_2827_c_37_3
Type: TC
Location: 2766 - 3059 (+)
Type: TC
Location: 2766 - 3059 (+)
Gene ID: Rep_2827_c_37_4
Type: TC
Location: 3069 - 4418 (+)
Type: TC
Location: 3069 - 4418 (+)
Gene ID: Rep_2827_c_37_5
Type: CAZyme
Location: 4420 - 5874 (+)
Type: CAZyme
Location: 4420 - 5874 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902464495
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2827_c_37_2 | vegetarian > vegan | 1.44584 | 0.04108 |
| Rep_2827_c_37_3 | vegetarian > vegan | 2.20911 | 0.02449 |
| Rep_2827_c_37_4 | vegetarian > vegan | 1.95030 | 0.02449 |
| Rep_2827_c_37_5 | vegetarian > vegan | 2.11030 | 0.02449 |