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Cluster: Rep_2827_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2827_c_21 Rep_2827_c_21_1 89 856 - 1.A.23.4.2
pfam Rep_2827_c_21 Rep_2827_c_21_2 1052 3010 - Metallophos | 5_nucleotid_C
TC Rep_2827_c_21 Rep_2827_c_21_3 3168 3962 - 3.A.1.34.1
TC Rep_2827_c_21 Rep_2827_c_21_4 3955 4878 - 3.A.1.34.1
TC Rep_2827_c_21 Rep_2827_c_21_5 5083 6063 - 3.A.1.34.1
NULL(UNKNOWN) Rep_2827_c_21 Rep_2827_c_21_6 6224 7009 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_2827_c_21 Rep_2827_c_21_7 7259 8662 - tRNA-synt_2 | tRNA_anti-codon
TC Rep_2827_c_21 Rep_2827_c_21_8 8844 9407 - 4.A.1.2.6
peptidase Rep_2827_c_21 Rep_2827_c_21_9 9651 10550 + S09.UPW
NULL(UNKNOWN) Rep_2827_c_21 Rep_2827_c_21_10 10598 10918 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2827_c_21 Rep_2827_c_21_11 11040 13400 + 9.A.8.1.6
TC Rep_2827_c_21 Rep_2827_c_21_12 13524 14720 + 2.A.1.2.18
CAZyme Rep_2827_c_21 Rep_2827_c_21_13 14874 16250 + GH13_20
Gene ID: Rep_2827_c_21_1
Type: TC
Location: 89 - 856 (-)
Gene ID: Rep_2827_c_21_2
Type: pfam
Location: 1052 - 3010 (-)
Gene ID: Rep_2827_c_21_3
Type: TC
Location: 3168 - 3962 (-)
Gene ID: Rep_2827_c_21_4
Type: TC
Location: 3955 - 4878 (-)
Gene ID: Rep_2827_c_21_5
Type: TC
Location: 5083 - 6063 (-)
Gene ID: Rep_2827_c_21_6
Type:
Location: 6224 - 7009 (-)
Gene ID: Rep_2827_c_21_7
Type: pfam
Location: 7259 - 8662 (-)
Gene ID: Rep_2827_c_21_8
Type: TC
Location: 8844 - 9407 (-)
Gene ID: Rep_2827_c_21_9
Type: peptidase
Location: 9651 - 10550 (+)
Gene ID: Rep_2827_c_21_10
Type:
Location: 10598 - 10918 (+)
Gene ID: Rep_2827_c_21_11
Type: TC
Location: 11040 - 13400 (+)
Gene ID: Rep_2827_c_21_12
Type: TC
Location: 13524 - 14720 (+)
Gene ID: Rep_2827_c_21_13
Type: CAZyme
Location: 14874 - 16250 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2827_c_21_2 vegan > omnivore 1.88086 0.01057
Rep_2827_c_21_2 vegetarian > omnivore 1.41690 0.01882

🧭 Explore Read Mapping of CGC

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