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Cluster: Rep_2827_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2827_c_18 Rep_2827_c_18_8 6894 8063 - CE9
STP Rep_2827_c_18 Rep_2827_c_18_9 8182 9348 - SIS | SIS
TF Rep_2827_c_18 Rep_2827_c_18_10 9463 10194 - GntR
TC Rep_2827_c_18 Rep_2827_c_18_11 10379 11461 - 4.A.6.1.4
TC Rep_2827_c_18 Rep_2827_c_18_12 11451 12251 - 4.A.6.1.4
TC Rep_2827_c_18 Rep_2827_c_18_13 12342 12824 - 4.A.6.1.4
pfam Rep_2827_c_18 Rep_2827_c_18_14 12861 13142 - YajC
TC Rep_2827_c_18 Rep_2827_c_18_15 13142 13585 - 4.A.6.1.16
Gene ID: Rep_2827_c_18_8
Type: CAZyme
Location: 6894 - 8063 (-)
Gene ID: Rep_2827_c_18_9
Type: STP
Location: 8182 - 9348 (-)
Gene ID: Rep_2827_c_18_10
Type: TF
Location: 9463 - 10194 (-)
Gene ID: Rep_2827_c_18_11
Type: TC
Location: 10379 - 11461 (-)
Gene ID: Rep_2827_c_18_12
Type: TC
Location: 11451 - 12251 (-)
Gene ID: Rep_2827_c_18_13
Type: TC
Location: 12342 - 12824 (-)
Gene ID: Rep_2827_c_18_14
Type: pfam
Location: 12861 - 13142 (-)
Gene ID: Rep_2827_c_18_15
Type: TC
Location: 13142 - 13585 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2827_c_18_14 vegan > omnivore 1.04833 0.01057

🧭 Explore Read Mapping of CGC

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