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Cluster: Rep_2827_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2827_c_15 Rep_2827_c_15_3 3441 5123 + 2.A.66.4.4
pfam Rep_2827_c_15 Rep_2827_c_15_4 5130 7070 + GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC Rep_2827_c_15 Rep_2827_c_15_5 7436 9049 + 3.A.1.5.27
TC Rep_2827_c_15 Rep_2827_c_15_6 9207 10163 + 3.A.1.5.38
TC Rep_2827_c_15 Rep_2827_c_15_7 10167 12182 + 3.A.1.5.25
TC Rep_2827_c_15 Rep_2827_c_15_8 12183 13010 + 3.A.1.5.27
CAZyme Rep_2827_c_15 Rep_2827_c_15_9 13142 14068 + CE7
Gene ID: Rep_2827_c_15_3
Type: TC
Location: 3441 - 5123 (+)
Gene ID: Rep_2827_c_15_4
Type: pfam
Location: 5130 - 7070 (+)
Gene ID: Rep_2827_c_15_5
Type: TC
Location: 7436 - 9049 (+)
Gene ID: Rep_2827_c_15_6
Type: TC
Location: 9207 - 10163 (+)
Gene ID: Rep_2827_c_15_7
Type: TC
Location: 10167 - 12182 (+)
Gene ID: Rep_2827_c_15_8
Type: TC
Location: 12183 - 13010 (+)
Gene ID: Rep_2827_c_15_9
Type: CAZyme
Location: 13142 - 14068 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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