Cluster: Rep_2811_CGC8
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_2811
- CGC Family ID: CGCFAM_00011
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2811_c_22 | Rep_2811_c_22_8 | 7358 | 8200 | - | 3.A.1.103.5 |
| CAZyme | Rep_2811_c_22 | Rep_2811_c_22_9 | 8323 | 9285 | + | GT81 |
| NULL(UNKNOWN) | Rep_2811_c_22 | Rep_2811_c_22_10 | 9227 | 9868 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2811_c_22 | Rep_2811_c_22_11 | 9894 | 11129 | - | GT4 |
| CAZyme | Rep_2811_c_22 | Rep_2811_c_22_12 | 11151 | 12209 | - | GT2 |
| CAZyme | Rep_2811_c_22 | Rep_2811_c_22_13 | 12218 | 13333 | - | GT2 |
| TC | Rep_2811_c_22 | Rep_2811_c_22_14 | 13335 | 14090 | - | 3.A.1.103.1 |
| TC | Rep_2811_c_22 | Rep_2811_c_22_15 | 14100 | 14912 | - | 3.A.1.103.4 |
| CAZyme | Rep_2811_c_22 | Rep_2811_c_22_16 | 15070 | 16206 | - | GT2 |
| CAZyme | Rep_2811_c_22 | Rep_2811_c_22_17 | 16402 | 18387 | + | GT2 |
Gene ID: Rep_2811_c_22_8
Type: TC
Location: 7358 - 8200 (-)
Type: TC
Location: 7358 - 8200 (-)
Gene ID: Rep_2811_c_22_9
Type: CAZyme
Location: 8323 - 9285 (+)
Type: CAZyme
Location: 8323 - 9285 (+)
Gene ID: Rep_2811_c_22_10
Type:
Location: 9227 - 9868 (+)
Type:
Location: 9227 - 9868 (+)
Gene ID: Rep_2811_c_22_11
Type: CAZyme
Location: 9894 - 11129 (-)
Type: CAZyme
Location: 9894 - 11129 (-)
Gene ID: Rep_2811_c_22_12
Type: CAZyme
Location: 11151 - 12209 (-)
Type: CAZyme
Location: 11151 - 12209 (-)
Gene ID: Rep_2811_c_22_13
Type: CAZyme
Location: 12218 - 13333 (-)
Type: CAZyme
Location: 12218 - 13333 (-)
Gene ID: Rep_2811_c_22_14
Type: TC
Location: 13335 - 14090 (-)
Type: TC
Location: 13335 - 14090 (-)
Gene ID: Rep_2811_c_22_15
Type: TC
Location: 14100 - 14912 (-)
Type: TC
Location: 14100 - 14912 (-)
Gene ID: Rep_2811_c_22_16
Type: CAZyme
Location: 15070 - 16206 (-)
Type: CAZyme
Location: 15070 - 16206 (-)
Gene ID: Rep_2811_c_22_17
Type: CAZyme
Location: 16402 - 18387 (+)
Type: CAZyme
Location: 16402 - 18387 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902496645
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2811_c_22_11 | vegetarian > vegan | 3.68433 | 0.03330 |
| Rep_2811_c_22_12 | vegetarian > vegan | 3.83537 | 0.03330 |
| Rep_2811_c_22_13 | vegetarian > vegan | 2.88662 | 0.03330 |
| Rep_2811_c_22_15 | vegetarian > vegan | 2.66550 | 0.03330 |
| Rep_2811_c_22_16 | vegetarian > vegan | 2.22855 | 0.03330 |