Cluster: Rep_2811_CGC6
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2811
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2811_c_15 | Rep_2811_c_15_10 | 11063 | 14071 | + | GH2 |
| NULL(UNKNOWN) | Rep_2811_c_15 | Rep_2811_c_15_11 | 14075 | 14530 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2811_c_15 | Rep_2811_c_15_12 | 14684 | 16147 | + | 2.A.3.7.4 |
| STP | Rep_2811_c_15 | Rep_2811_c_15_13 | 16569 | 16817 | + | PTS-HPr |
| STP | Rep_2811_c_15 | Rep_2811_c_15_14 | 17006 | 17248 | + | FeoA |
| TC | Rep_2811_c_15 | Rep_2811_c_15_15 | 17288 | 17509 | + | 9.A.8.1.6 |
| TC | Rep_2811_c_15 | Rep_2811_c_15_16 | 17633 | 19960 | + | 9.A.8.1.6 |
Gene ID: Rep_2811_c_15_10
Type: CAZyme
Location: 11063 - 14071 (+)
Type: CAZyme
Location: 11063 - 14071 (+)
Gene ID: Rep_2811_c_15_11
Type:
Location: 14075 - 14530 (+)
Type:
Location: 14075 - 14530 (+)
Gene ID: Rep_2811_c_15_12
Type: TC
Location: 14684 - 16147 (+)
Type: TC
Location: 14684 - 16147 (+)
Gene ID: Rep_2811_c_15_13
Type: STP
Location: 16569 - 16817 (+)
Type: STP
Location: 16569 - 16817 (+)
Gene ID: Rep_2811_c_15_14
Type: STP
Location: 17006 - 17248 (+)
Type: STP
Location: 17006 - 17248 (+)
Gene ID: Rep_2811_c_15_15
Type: TC
Location: 17288 - 17509 (+)
Type: TC
Location: 17288 - 17509 (+)
Gene ID: Rep_2811_c_15_16
Type: TC
Location: 17633 - 19960 (+)
Type: TC
Location: 17633 - 19960 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902496645
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.