Cluster: Rep_2811_CGC2
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2811
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2811_c_6 | Rep_2811_c_6_16 | 19053 | 19379 | + | 4.A.3.2.7 |
| TC | Rep_2811_c_6 | Rep_2811_c_6_17 | 19426 | 19719 | + | 4.A.3.2.6 |
| TC | Rep_2811_c_6 | Rep_2811_c_6_18 | 19729 | 21078 | + | 4.A.3.2.6 |
| CAZyme | Rep_2811_c_6 | Rep_2811_c_6_19 | 21080 | 22534 | + | GH1 |
Gene ID: Rep_2811_c_6_16
Type: TC
Location: 19053 - 19379 (+)
Type: TC
Location: 19053 - 19379 (+)
Gene ID: Rep_2811_c_6_17
Type: TC
Location: 19426 - 19719 (+)
Type: TC
Location: 19426 - 19719 (+)
Gene ID: Rep_2811_c_6_18
Type: TC
Location: 19729 - 21078 (+)
Type: TC
Location: 19729 - 21078 (+)
Gene ID: Rep_2811_c_6_19
Type: CAZyme
Location: 21080 - 22534 (+)
Type: CAZyme
Location: 21080 - 22534 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902496645
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2811_c_6_16 | vegetarian > vegan | 1.39009 | 0.03330 |
| Rep_2811_c_6_17 | vegetarian > vegan | 2.13510 | 0.03330 |
| Rep_2811_c_6_18 | vegetarian > vegan | 1.87472 | 0.03330 |
| Rep_2811_c_6_19 | vegetarian > vegan | 2.17500 | 0.03330 |