Cluster: Rep_2811_CGC13
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2811
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2811_c_36 | Rep_2811_c_36_3 | 1271 | 2587 | + | 3.A.1.1.45 |
| TC | Rep_2811_c_36 | Rep_2811_c_36_4 | 2675 | 3529 | + | 3.A.1.1.45 |
| TC | Rep_2811_c_36 | Rep_2811_c_36_5 | 3529 | 4368 | + | 3.A.1.1.45 |
| TC | Rep_2811_c_36 | Rep_2811_c_36_6 | 4437 | 5636 | + | 3.A.1.1.22 |
| CAZyme | Rep_2811_c_36 | Rep_2811_c_36_7 | 6172 | 8439 | - | GT35 |
| CAZyme | Rep_2811_c_36 | Rep_2811_c_36_8 | 8568 | 10073 | - | GH77 |
Gene ID: Rep_2811_c_36_3
Type: TC
Location: 1271 - 2587 (+)
Type: TC
Location: 1271 - 2587 (+)
Gene ID: Rep_2811_c_36_4
Type: TC
Location: 2675 - 3529 (+)
Type: TC
Location: 2675 - 3529 (+)
Gene ID: Rep_2811_c_36_5
Type: TC
Location: 3529 - 4368 (+)
Type: TC
Location: 3529 - 4368 (+)
Gene ID: Rep_2811_c_36_6
Type: TC
Location: 4437 - 5636 (+)
Type: TC
Location: 4437 - 5636 (+)
Gene ID: Rep_2811_c_36_7
Type: CAZyme
Location: 6172 - 8439 (-)
Type: CAZyme
Location: 6172 - 8439 (-)
Gene ID: Rep_2811_c_36_8
Type: CAZyme
Location: 8568 - 10073 (-)
Type: CAZyme
Location: 8568 - 10073 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902496645
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.