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Cluster: Rep_2796_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2796_c_0 Rep_2796_c_0_656 750885 752054 - CE9
STP Rep_2796_c_0 Rep_2796_c_0_657 752172 753338 - SIS | SIS
TF Rep_2796_c_0 Rep_2796_c_0_658 753453 754184 - GntR
TC Rep_2796_c_0 Rep_2796_c_0_659 754370 755452 - 4.A.6.1.4
TC Rep_2796_c_0 Rep_2796_c_0_660 755442 756242 - 4.A.6.1.4
TC Rep_2796_c_0 Rep_2796_c_0_661 756333 756815 - 4.A.6.1.4
pfam Rep_2796_c_0 Rep_2796_c_0_662 756852 757133 - YajC
TC Rep_2796_c_0 Rep_2796_c_0_663 757133 757576 - 4.A.6.1.16
Gene ID: Rep_2796_c_0_656
Type: CAZyme
Location: 750885 - 752054 (-)
Gene ID: Rep_2796_c_0_657
Type: STP
Location: 752172 - 753338 (-)
Gene ID: Rep_2796_c_0_658
Type: TF
Location: 753453 - 754184 (-)
Gene ID: Rep_2796_c_0_659
Type: TC
Location: 754370 - 755452 (-)
Gene ID: Rep_2796_c_0_660
Type: TC
Location: 755442 - 756242 (-)
Gene ID: Rep_2796_c_0_661
Type: TC
Location: 756333 - 756815 (-)
Gene ID: Rep_2796_c_0_662
Type: pfam
Location: 756852 - 757133 (-)
Gene ID: Rep_2796_c_0_663
Type: TC
Location: 757133 - 757576 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2796_c_0_662 vegan > omnivore 1.04035 0.00701

🧭 Explore Read Mapping of CGC

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