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Cluster: Rep_2796_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2796_c_0 Rep_2796_c_0_457 521700 523076 - GH13_20
TC Rep_2796_c_0 Rep_2796_c_0_458 523230 524426 - 2.A.1.2.18
TC Rep_2796_c_0 Rep_2796_c_0_459 524547 526907 - 9.A.8.1.6
peptidase Rep_2796_c_0 Rep_2796_c_0_460 527319 528221 - S09.UPW
TC Rep_2796_c_0 Rep_2796_c_0_461 528466 529029 + 4.A.1.2.6
pfam Rep_2796_c_0 Rep_2796_c_0_462 529211 530614 + tRNA-synt_2 | tRNA_anti-codon
NULL(UNKNOWN) Rep_2796_c_0 Rep_2796_c_0_463 530874 531659 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2796_c_0 Rep_2796_c_0_464 531820 532800 + 3.A.1.34.1
TC Rep_2796_c_0 Rep_2796_c_0_465 533005 533928 + 3.A.1.34.1
TC Rep_2796_c_0 Rep_2796_c_0_466 533921 534715 + 3.A.1.34.1
pfam Rep_2796_c_0 Rep_2796_c_0_467 534788 536812 + Metallophos | 5_nucleotid_C
TC Rep_2796_c_0 Rep_2796_c_0_468 536941 537708 + 1.A.23.4.10
pfam Rep_2796_c_0 Rep_2796_c_0_469 537801 539717 + Bmp
pfam Rep_2796_c_0 Rep_2796_c_0_470 539714 540424 + Metallophos | Metallophos_2
TC Rep_2796_c_0 Rep_2796_c_0_471 540550 541257 - 1.C.82.1.1
Gene ID: Rep_2796_c_0_457
Type: CAZyme
Location: 521700 - 523076 (-)
Gene ID: Rep_2796_c_0_458
Type: TC
Location: 523230 - 524426 (-)
Gene ID: Rep_2796_c_0_459
Type: TC
Location: 524547 - 526907 (-)
Gene ID: Rep_2796_c_0_460
Type: peptidase
Location: 527319 - 528221 (-)
Gene ID: Rep_2796_c_0_461
Type: TC
Location: 528466 - 529029 (+)
Gene ID: Rep_2796_c_0_462
Type: pfam
Location: 529211 - 530614 (+)
Gene ID: Rep_2796_c_0_463
Type:
Location: 530874 - 531659 (+)
Gene ID: Rep_2796_c_0_464
Type: TC
Location: 531820 - 532800 (+)
Gene ID: Rep_2796_c_0_465
Type: TC
Location: 533005 - 533928 (+)
Gene ID: Rep_2796_c_0_466
Type: TC
Location: 533921 - 534715 (+)
Gene ID: Rep_2796_c_0_467
Type: pfam
Location: 534788 - 536812 (+)
Gene ID: Rep_2796_c_0_468
Type: TC
Location: 536941 - 537708 (+)
Gene ID: Rep_2796_c_0_469
Type: pfam
Location: 537801 - 539717 (+)
Gene ID: Rep_2796_c_0_470
Type: pfam
Location: 539714 - 540424 (+)
Gene ID: Rep_2796_c_0_471
Type: TC
Location: 540550 - 541257 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2796_c_0_467 vegan > omnivore 1.96489 0.00701
Rep_2796_c_0_467 vegetarian > omnivore 1.44679 0.01557

🧭 Explore Read Mapping of CGC

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