Cluster: Rep_2795_CGC7
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2795
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2795_c_2 | Rep_2795_c_2_41 | 51021 | 51494 | + | 4.A.6.1.18 |
| TC | Rep_2795_c_2 | Rep_2795_c_2_42 | 51504 | 52289 | + | 4.A.6.1.13 |
| TC | Rep_2795_c_2 | Rep_2795_c_2_43 | 52292 | 53122 | + | 4.A.6.1.13 |
| pfam | Rep_2795_c_2 | Rep_2795_c_2_44 | 53149 | 53547 | + | EIIA-man |
| CAZyme | Rep_2795_c_2 | Rep_2795_c_2_45 | 53560 | 54684 | + | GH172 |
Gene ID: Rep_2795_c_2_41
Type: TC
Location: 51021 - 51494 (+)
Type: TC
Location: 51021 - 51494 (+)
Gene ID: Rep_2795_c_2_42
Type: TC
Location: 51504 - 52289 (+)
Type: TC
Location: 51504 - 52289 (+)
Gene ID: Rep_2795_c_2_43
Type: TC
Location: 52292 - 53122 (+)
Type: TC
Location: 52292 - 53122 (+)
Gene ID: Rep_2795_c_2_44
Type: pfam
Location: 53149 - 53547 (+)
Type: pfam
Location: 53149 - 53547 (+)
Gene ID: Rep_2795_c_2_45
Type: CAZyme
Location: 53560 - 54684 (+)
Type: CAZyme
Location: 53560 - 54684 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900549275
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2795_c_2_41 | vegan > omnivore | 1.03897 | 0.00863 |