Cluster: Rep_2795_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2795
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2795_c_28 | Rep_2795_c_28_16 | 16022 | 17464 | + | 3.A.1.8.1 |
| TC | Rep_2795_c_28 | Rep_2795_c_28_17 | 17468 | 18538 | + | 3.A.1.1.3 |
| pfam | Rep_2795_c_28 | Rep_2795_c_28_18 | 18968 | 20134 | + | HGD-D |
| pfam | Rep_2795_c_28 | Rep_2795_c_28_19 | 20185 | 20949 | + | BcrAD_BadFG |
| CAZyme | Rep_2795_c_28 | Rep_2795_c_28_20 | 20964 | 22181 | + | GT4 |
Gene ID: Rep_2795_c_28_16
Type: TC
Location: 16022 - 17464 (+)
Type: TC
Location: 16022 - 17464 (+)
Gene ID: Rep_2795_c_28_17
Type: TC
Location: 17468 - 18538 (+)
Type: TC
Location: 17468 - 18538 (+)
Gene ID: Rep_2795_c_28_18
Type: pfam
Location: 18968 - 20134 (+)
Type: pfam
Location: 18968 - 20134 (+)
Gene ID: Rep_2795_c_28_19
Type: pfam
Location: 20185 - 20949 (+)
Type: pfam
Location: 20185 - 20949 (+)
Gene ID: Rep_2795_c_28_20
Type: CAZyme
Location: 20964 - 22181 (+)
Type: CAZyme
Location: 20964 - 22181 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900549275
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2795_c_28_20 | vegan > omnivore | 1.62984 | 0.00863 |