Cluster: Rep_2795_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2795
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2795_c_9 | Rep_2795_c_9_28 | 33012 | 35780 | + | 3.A.3.4.1 |
| sulfatase | Rep_2795_c_9 | Rep_2795_c_9_29 | 35920 | 36831 | - | S1_7 |
| NULL(UNKNOWN) | Rep_2795_c_9 | Rep_2795_c_9_30 | 36898 | 37167 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2795_c_9 | Rep_2795_c_9_31 | 37185 | 38498 | - | GH140 |
| TC | Rep_2795_c_9 | Rep_2795_c_9_32 | 38709 | 40136 | - | 4.A.1.2.11 |
Gene ID: Rep_2795_c_9_28
Type: TC
Location: 33012 - 35780 (+)
Type: TC
Location: 33012 - 35780 (+)
Gene ID: Rep_2795_c_9_29
Type: sulfatase
Location: 35920 - 36831 (-)
Type: sulfatase
Location: 35920 - 36831 (-)
Gene ID: Rep_2795_c_9_30
Type:
Location: 36898 - 37167 (+)
Type:
Location: 36898 - 37167 (+)
Gene ID: Rep_2795_c_9_31
Type: CAZyme
Location: 37185 - 38498 (-)
Type: CAZyme
Location: 37185 - 38498 (-)
Gene ID: Rep_2795_c_9_32
Type: TC
Location: 38709 - 40136 (-)
Type: TC
Location: 38709 - 40136 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900549275
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2795_c_9_29 | vegetarian > vegan | 1.23854 | 0.04951 |