dbCAN Logo

Cluster: Rep_2793_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2793_c_12 Rep_2793_c_12_30 30307 30750 + 4.A.6.1.16
pfam Rep_2793_c_12 Rep_2793_c_12_31 30750 31031 + YajC
TC Rep_2793_c_12 Rep_2793_c_12_32 31068 31550 + 4.A.6.1.4
TC Rep_2793_c_12 Rep_2793_c_12_33 31640 32440 + 4.A.6.1.4
TC Rep_2793_c_12 Rep_2793_c_12_34 32430 33512 + 4.A.6.1.4
TF Rep_2793_c_12 Rep_2793_c_12_35 33697 34428 + GntR
STP Rep_2793_c_12 Rep_2793_c_12_36 34543 35709 + SIS | SIS
CAZyme Rep_2793_c_12 Rep_2793_c_12_37 35829 36998 + CE9
Gene ID: Rep_2793_c_12_30
Type: TC
Location: 30307 - 30750 (+)
Gene ID: Rep_2793_c_12_31
Type: pfam
Location: 30750 - 31031 (+)
Gene ID: Rep_2793_c_12_32
Type: TC
Location: 31068 - 31550 (+)
Gene ID: Rep_2793_c_12_33
Type: TC
Location: 31640 - 32440 (+)
Gene ID: Rep_2793_c_12_34
Type: TC
Location: 32430 - 33512 (+)
Gene ID: Rep_2793_c_12_35
Type: TF
Location: 33697 - 34428 (+)
Gene ID: Rep_2793_c_12_36
Type: STP
Location: 34543 - 35709 (+)
Gene ID: Rep_2793_c_12_37
Type: CAZyme
Location: 35829 - 36998 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2793_c_12_31 vegan > omnivore 1.13700 0.00364

🧭 Explore Read Mapping of CGC

← Back to Cluster List