dbCAN Logo

Cluster: Rep_2793_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2793_c_18 Rep_2793_c_18_5 3015 4436 - GH1
TC Rep_2793_c_18 Rep_2793_c_18_6 4513 6291 - 4.A.3.1.1
TF Rep_2793_c_18 Rep_2793_c_18_7 6576 7577 + LacI
TC Rep_2793_c_18 Rep_2793_c_18_8 7835 9595 - 4.A.3.1.1
CAZyme Rep_2793_c_18 Rep_2793_c_18_9 9772 11214 - GH1
TF Rep_2793_c_18 Rep_2793_c_18_10 11556 12593 + LacI
CAZyme Rep_2793_c_18 Rep_2793_c_18_11 12855 14294 - GH1
TC Rep_2793_c_18 Rep_2793_c_18_12 14361 16136 - 4.A.3.1.1
TF Rep_2793_c_18 Rep_2793_c_18_13 16463 17497 + LacI
TC Rep_2793_c_18 Rep_2793_c_18_14 17712 18050 + 4.A.3.1.2
Gene ID: Rep_2793_c_18_5
Type: CAZyme
Location: 3015 - 4436 (-)
Gene ID: Rep_2793_c_18_6
Type: TC
Location: 4513 - 6291 (-)
Gene ID: Rep_2793_c_18_7
Type: TF
Location: 6576 - 7577 (+)
Gene ID: Rep_2793_c_18_8
Type: TC
Location: 7835 - 9595 (-)
Gene ID: Rep_2793_c_18_9
Type: CAZyme
Location: 9772 - 11214 (-)
Gene ID: Rep_2793_c_18_10
Type: TF
Location: 11556 - 12593 (+)
Gene ID: Rep_2793_c_18_11
Type: CAZyme
Location: 12855 - 14294 (-)
Gene ID: Rep_2793_c_18_12
Type: TC
Location: 14361 - 16136 (-)
Gene ID: Rep_2793_c_18_13
Type: TF
Location: 16463 - 17497 (+)
Gene ID: Rep_2793_c_18_14
Type: TC
Location: 17712 - 18050 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2793_c_18_10 vegetarian > omnivore 1.03472 0.02677

🧭 Explore Read Mapping of CGC

← Back to Cluster List