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Cluster: Rep_2792_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2792_c_2 Rep_2792_c_2_12 11039 12523 + 4.A.1.1.7
TF Rep_2792_c_2 Rep_2792_c_2_13 12755 13486 + GntR
CAZyme Rep_2792_c_2 Rep_2792_c_2_14 13630 14799 + CE9
pfam Rep_2792_c_2 Rep_2792_c_2_15 14832 15305 + DUF386
TC Rep_2792_c_2 Rep_2792_c_2_16 15798 16277 + 4.A.6.1.5
sulfatase Rep_2792_c_2 Rep_2792_c_2_17 16362 17414 - S1_4
NULL(UNKNOWN) Rep_2792_c_2 Rep_2792_c_2_18 17597 18139 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2792_c_2 Rep_2792_c_2_19 18168 19121 - 4.A.5.1.6
Gene ID: Rep_2792_c_2_12
Type: TC
Location: 11039 - 12523 (+)
Gene ID: Rep_2792_c_2_13
Type: TF
Location: 12755 - 13486 (+)
Gene ID: Rep_2792_c_2_14
Type: CAZyme
Location: 13630 - 14799 (+)
Gene ID: Rep_2792_c_2_15
Type: pfam
Location: 14832 - 15305 (+)
Gene ID: Rep_2792_c_2_16
Type: TC
Location: 15798 - 16277 (+)
Gene ID: Rep_2792_c_2_17
Type: sulfatase
Location: 16362 - 17414 (-)
Gene ID: Rep_2792_c_2_18
Type:
Location: 17597 - 18139 (-)
Gene ID: Rep_2792_c_2_19
Type: TC
Location: 18168 - 19121 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2792_c_2_13 vegetarian > vegan 3.26983 0.01882

🧭 Explore Read Mapping of CGC

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