Cluster: Rep_2792_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2792
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2792_c_0 | Rep_2792_c_0_72 | 84856 | 85605 | - | 3.A.1.3.20 |
| TC | Rep_2792_c_0 | Rep_2792_c_0_73 | 85618 | 86979 | - | 3.A.1.3.16 |
| TC | Rep_2792_c_0 | Rep_2792_c_0_74 | 87096 | 87956 | - | 3.A.1.3.15 |
| pfam | Rep_2792_c_0 | Rep_2792_c_0_75 | 88101 | 88970 | - | AP_endonuc_2 |
| CAZyme | Rep_2792_c_0 | Rep_2792_c_0_76 | 89122 | 90141 | - | GH109 |
Gene ID: Rep_2792_c_0_72
Type: TC
Location: 84856 - 85605 (-)
Type: TC
Location: 84856 - 85605 (-)
Gene ID: Rep_2792_c_0_73
Type: TC
Location: 85618 - 86979 (-)
Type: TC
Location: 85618 - 86979 (-)
Gene ID: Rep_2792_c_0_74
Type: TC
Location: 87096 - 87956 (-)
Type: TC
Location: 87096 - 87956 (-)
Gene ID: Rep_2792_c_0_75
Type: pfam
Location: 88101 - 88970 (-)
Type: pfam
Location: 88101 - 88970 (-)
Gene ID: Rep_2792_c_0_76
Type: CAZyme
Location: 89122 - 90141 (-)
Type: CAZyme
Location: 89122 - 90141 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900556415
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.