Cluster: Rep_2786_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_2786
- CGC Family ID: CGCFAM_00156
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2786_c_9 | Rep_2786_c_9_8 | 5868 | 7547 | + | 3.A.1.120.6 |
| NULL(UNKNOWN) | Rep_2786_c_9 | Rep_2786_c_9_9 | 7638 | 8840 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_2786_c_9 | Rep_2786_c_9_10 | 8924 | 9811 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2786_c_9 | Rep_2786_c_9_11 | 10075 | 11097 | - | GT2 |
| CAZyme | Rep_2786_c_9 | Rep_2786_c_9_12 | 11272 | 12372 | + | GT2 |
| CAZyme | Rep_2786_c_9 | Rep_2786_c_9_13 | 12365 | 13417 | + | GT2 |
Gene ID: Rep_2786_c_9_8
Type: TC
Location: 5868 - 7547 (+)
Type: TC
Location: 5868 - 7547 (+)
Gene ID: Rep_2786_c_9_9
Type:
Location: 7638 - 8840 (-)
Type:
Location: 7638 - 8840 (-)
Gene ID: Rep_2786_c_9_10
Type:
Location: 8924 - 9811 (-)
Type:
Location: 8924 - 9811 (-)
Gene ID: Rep_2786_c_9_11
Type: CAZyme
Location: 10075 - 11097 (-)
Type: CAZyme
Location: 10075 - 11097 (-)
Gene ID: Rep_2786_c_9_12
Type: CAZyme
Location: 11272 - 12372 (+)
Type: CAZyme
Location: 11272 - 12372 (+)
Gene ID: Rep_2786_c_9_13
Type: CAZyme
Location: 12365 - 13417 (+)
Type: CAZyme
Location: 12365 - 13417 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella bouchesdurhonensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.