Cluster: Rep_2786_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2786
- CGC Family ID: CGCFAM_00932
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2786_c_4 | Rep_2786_c_4_72 | 83354 | 84400 | - | 3.A.1.2.13 |
| TC | Rep_2786_c_4 | Rep_2786_c_4_73 | 84432 | 85916 | - | 3.A.1.2.13 |
| STP | Rep_2786_c_4 | Rep_2786_c_4_74 | 86023 | 87132 | - | Peripla_BP_1 |
| pfam | Rep_2786_c_4 | Rep_2786_c_4_75 | 87185 | 88105 | - | AP_endonuc_2 |
| CAZyme | Rep_2786_c_4 | Rep_2786_c_4_76 | 88109 | 89146 | - | GH179 |
Gene ID: Rep_2786_c_4_72
Type: TC
Location: 83354 - 84400 (-)
Type: TC
Location: 83354 - 84400 (-)
Gene ID: Rep_2786_c_4_73
Type: TC
Location: 84432 - 85916 (-)
Type: TC
Location: 84432 - 85916 (-)
Gene ID: Rep_2786_c_4_74
Type: STP
Location: 86023 - 87132 (-)
Type: STP
Location: 86023 - 87132 (-)
Gene ID: Rep_2786_c_4_75
Type: pfam
Location: 87185 - 88105 (-)
Type: pfam
Location: 87185 - 88105 (-)
Gene ID: Rep_2786_c_4_76
Type: CAZyme
Location: 88109 - 89146 (-)
Type: CAZyme
Location: 88109 - 89146 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella bouchesdurhonensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.