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Cluster: Rep_2775_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2775_c_3 Rep_2775_c_3_65 51837 53147 + 3.A.1.26.3
TC Rep_2775_c_3 Rep_2775_c_3_66 53140 53901 + 3.A.1.25.4
pfam Rep_2775_c_3 Rep_2775_c_3_67 53940 54734 + PseudoU_synth_1
TC Rep_2775_c_3 Rep_2775_c_3_68 55021 55923 + 2.A.119.2.2
NULL(UNKNOWN) Rep_2775_c_3 Rep_2775_c_3_69 55954 56733 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2775_c_3 Rep_2775_c_3_70 56862 57929 + GT2
CAZyme Rep_2775_c_3 Rep_2775_c_3_71 57931 59046 - GT2
CAZyme Rep_2775_c_3 Rep_2775_c_3_72 59135 60127 + GT2
STP Rep_2775_c_3 Rep_2775_c_3_73 60176 61465 + Fer4
pfam Rep_2775_c_3 Rep_2775_c_3_74 61513 62589 + MMR_HSR1 | YchF-GTPase_C
TC Rep_2775_c_3 Rep_2775_c_3_75 62636 63805 + 3.A.24.3.1
Gene ID: Rep_2775_c_3_65
Type: TC
Location: 51837 - 53147 (+)
Gene ID: Rep_2775_c_3_66
Type: TC
Location: 53140 - 53901 (+)
Gene ID: Rep_2775_c_3_67
Type: pfam
Location: 53940 - 54734 (+)
Gene ID: Rep_2775_c_3_68
Type: TC
Location: 55021 - 55923 (+)
Gene ID: Rep_2775_c_3_69
Type:
Location: 55954 - 56733 (+)
Gene ID: Rep_2775_c_3_70
Type: CAZyme
Location: 56862 - 57929 (+)
Gene ID: Rep_2775_c_3_71
Type: CAZyme
Location: 57931 - 59046 (-)
Gene ID: Rep_2775_c_3_72
Type: CAZyme
Location: 59135 - 60127 (+)
Gene ID: Rep_2775_c_3_73
Type: STP
Location: 60176 - 61465 (+)
Gene ID: Rep_2775_c_3_74
Type: pfam
Location: 61513 - 62589 (+)
Gene ID: Rep_2775_c_3_75
Type: TC
Location: 62636 - 63805 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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