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Cluster: Rep_2775_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2775_c_1 Rep_2775_c_1_156 170470 171624 - CE9
STP Rep_2775_c_1 Rep_2775_c_1_157 171694 172860 - SIS
TF Rep_2775_c_1 Rep_2775_c_1_158 172889 173617 - GntR
TC Rep_2775_c_1 Rep_2775_c_1_159 173773 174849 - 4.A.6.1.4
TC Rep_2775_c_1 Rep_2775_c_1_160 174839 175639 - 4.A.6.1.4
TC Rep_2775_c_1 Rep_2775_c_1_161 175724 176206 - 4.A.6.1.4
pfam Rep_2775_c_1 Rep_2775_c_1_162 176273 176557 - YajC
TC Rep_2775_c_1 Rep_2775_c_1_163 176557 176991 - 4.A.6.1.10
Gene ID: Rep_2775_c_1_156
Type: CAZyme
Location: 170470 - 171624 (-)
Gene ID: Rep_2775_c_1_157
Type: STP
Location: 171694 - 172860 (-)
Gene ID: Rep_2775_c_1_158
Type: TF
Location: 172889 - 173617 (-)
Gene ID: Rep_2775_c_1_159
Type: TC
Location: 173773 - 174849 (-)
Gene ID: Rep_2775_c_1_160
Type: TC
Location: 174839 - 175639 (-)
Gene ID: Rep_2775_c_1_161
Type: TC
Location: 175724 - 176206 (-)
Gene ID: Rep_2775_c_1_162
Type: pfam
Location: 176273 - 176557 (-)
Gene ID: Rep_2775_c_1_163
Type: TC
Location: 176557 - 176991 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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