Cluster: Rep_2752_CGC18
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_2752
- CGC Family ID: CGCFAM_00009
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2752_c_433 | Rep_2752_c_433_10 | 8419 | 9705 | + | 2.A.6.2.42 |
| TC | Rep_2752_c_433 | Rep_2752_c_433_11 | 9711 | 12815 | + | 2.A.6.2.46 |
| NULL(UNKNOWN) | Rep_2752_c_433 | Rep_2752_c_433_12 | 12870 | 14180 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_2752_c_433 | Rep_2752_c_433_13 | 14292 | 15536 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2752_c_433 | Rep_2752_c_433_14 | 15575 | 16732 | - | GT4 |
| CAZyme | Rep_2752_c_433 | Rep_2752_c_433_15 | 17012 | 18181 | - | GT4 |
| CAZyme | Rep_2752_c_433 | Rep_2752_c_433_16 | 18192 | 19316 | - | GT4 |
| pfam | Rep_2752_c_433 | Rep_2752_c_433_17 | 19322 | 20071 | - | MTS | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| pfam | Rep_2752_c_433 | Rep_2752_c_433_18 | 20122 | 21111 | - | Radical_SAM | SPASM |
| CAZyme | Rep_2752_c_433 | Rep_2752_c_433_19 | 21108 | 22202 | - | GT4 |
| CAZyme | Rep_2752_c_433 | Rep_2752_c_433_20 | 22202 | 23383 | - | GT4 |
| CAZyme | Rep_2752_c_433 | Rep_2752_c_433_21 | 23380 | 24600 | - | GT4 |
| CAZyme | Rep_2752_c_433 | Rep_2752_c_433_22 | 24632 | 25399 | - | GT2 |
Gene ID: Rep_2752_c_433_10
Type: TC
Location: 8419 - 9705 (+)
Type: TC
Location: 8419 - 9705 (+)
Gene ID: Rep_2752_c_433_11
Type: TC
Location: 9711 - 12815 (+)
Type: TC
Location: 9711 - 12815 (+)
Gene ID: Rep_2752_c_433_12
Type:
Location: 12870 - 14180 (+)
Type:
Location: 12870 - 14180 (+)
Gene ID: Rep_2752_c_433_13
Type:
Location: 14292 - 15536 (+)
Type:
Location: 14292 - 15536 (+)
Gene ID: Rep_2752_c_433_14
Type: CAZyme
Location: 15575 - 16732 (-)
Type: CAZyme
Location: 15575 - 16732 (-)
Gene ID: Rep_2752_c_433_15
Type: CAZyme
Location: 17012 - 18181 (-)
Type: CAZyme
Location: 17012 - 18181 (-)
Gene ID: Rep_2752_c_433_16
Type: CAZyme
Location: 18192 - 19316 (-)
Type: CAZyme
Location: 18192 - 19316 (-)
Gene ID: Rep_2752_c_433_17
Type: pfam
Location: 19322 - 20071 (-)
Type: pfam
Location: 19322 - 20071 (-)
Gene ID: Rep_2752_c_433_18
Type: pfam
Location: 20122 - 21111 (-)
Type: pfam
Location: 20122 - 21111 (-)
Gene ID: Rep_2752_c_433_19
Type: CAZyme
Location: 21108 - 22202 (-)
Type: CAZyme
Location: 21108 - 22202 (-)
Gene ID: Rep_2752_c_433_20
Type: CAZyme
Location: 22202 - 23383 (-)
Type: CAZyme
Location: 22202 - 23383 (-)
Gene ID: Rep_2752_c_433_21
Type: CAZyme
Location: 23380 - 24600 (-)
Type: CAZyme
Location: 23380 - 24600 (-)
Gene ID: Rep_2752_c_433_22
Type: CAZyme
Location: 24632 - 25399 (-)
Type: CAZyme
Location: 24632 - 25399 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Desulfobacterota
Class
Desulfovibrionia
Order
Desulfovibrionales
Family
Desulfovibrionaceae
Genus
Frigididesulfovibrio
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.