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Cluster: Rep_274_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_274_c_0 Rep_274_c_0_116 162453 164765 + 8.A.3.3.4
NULL(UNKNOWN) Rep_274_c_0 Rep_274_c_0_117 164755 166131 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_274_c_0 Rep_274_c_0_118 166136 167824 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_274_c_0 Rep_274_c_0_119 167901 168848 - GT2
NULL(UNKNOWN) Rep_274_c_0 Rep_274_c_0_120 168989 169096 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_274_c_0 Rep_274_c_0_121 169093 170205 + GT4
CAZyme Rep_274_c_0 Rep_274_c_0_122 170251 171459 + GT4
pfam Rep_274_c_0 Rep_274_c_0_123 171592 172605 + Radical_SAM | SPASM
CAZyme Rep_274_c_0 Rep_274_c_0_124 172649 173737 + GT4
Gene ID: Rep_274_c_0_116
Type: TC
Location: 162453 - 164765 (+)
Gene ID: Rep_274_c_0_117
Type:
Location: 164755 - 166131 (+)
Gene ID: Rep_274_c_0_118
Type:
Location: 166136 - 167824 (+)
Gene ID: Rep_274_c_0_119
Type: CAZyme
Location: 167901 - 168848 (-)
Gene ID: Rep_274_c_0_120
Type:
Location: 168989 - 169096 (+)
Gene ID: Rep_274_c_0_121
Type: CAZyme
Location: 169093 - 170205 (+)
Gene ID: Rep_274_c_0_122
Type: CAZyme
Location: 170251 - 171459 (+)
Gene ID: Rep_274_c_0_123
Type: pfam
Location: 171592 - 172605 (+)
Gene ID: Rep_274_c_0_124
Type: CAZyme
Location: 172649 - 173737 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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