Cluster: Rep_2718_CGC7
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2718
- CGC Family ID: CGCFAM_09336
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2718_c_0 | Rep_2718_c_0_1373 | 1470025 | 1471062 | + | 3.A.11.1.4 |
| CAZyme | Rep_2718_c_0 | Rep_2718_c_0_1374 | 1471042 | 1472772 | - | GH2 |
| pfam | Rep_2718_c_0 | Rep_2718_c_0_1375 | 1472799 | 1473533 | - | adh_short | KR | adh_short_C2 |
| TC | Rep_2718_c_0 | Rep_2718_c_0_1376 | 1473709 | 1475508 | + | 3.A.1.106.8 |
| TC | Rep_2718_c_0 | Rep_2718_c_0_1377 | 1475505 | 1477322 | + | 3.A.1.135.5 |
| pfam | Rep_2718_c_0 | Rep_2718_c_0_1378 | 1477494 | 1477964 | + | Y1_Tnp |
| TC | Rep_2718_c_0 | Rep_2718_c_0_1379 | 1478457 | 1479878 | + | 2.A.25.1.3 |
| TC | Rep_2718_c_0 | Rep_2718_c_0_1380 | 1480302 | 1481723 | + | 2.A.25.1.3 |
| sulfatase | Rep_2718_c_0 | Rep_2718_c_0_1381 | 1481807 | 1484437 | - | S1_97 |
| TC | Rep_2718_c_0 | Rep_2718_c_0_1382 | 1484566 | 1485927 | + | 2.A.66.1.33 |
Gene ID: Rep_2718_c_0_1373
Type: TC
Location: 1470025 - 1471062 (+)
Type: TC
Location: 1470025 - 1471062 (+)
Gene ID: Rep_2718_c_0_1374
Type: CAZyme
Location: 1471042 - 1472772 (-)
Type: CAZyme
Location: 1471042 - 1472772 (-)
Gene ID: Rep_2718_c_0_1375
Type: pfam
Location: 1472799 - 1473533 (-)
Type: pfam
Location: 1472799 - 1473533 (-)
Gene ID: Rep_2718_c_0_1376
Type: TC
Location: 1473709 - 1475508 (+)
Type: TC
Location: 1473709 - 1475508 (+)
Gene ID: Rep_2718_c_0_1377
Type: TC
Location: 1475505 - 1477322 (+)
Type: TC
Location: 1475505 - 1477322 (+)
Gene ID: Rep_2718_c_0_1378
Type: pfam
Location: 1477494 - 1477964 (+)
Type: pfam
Location: 1477494 - 1477964 (+)
Gene ID: Rep_2718_c_0_1379
Type: TC
Location: 1478457 - 1479878 (+)
Type: TC
Location: 1478457 - 1479878 (+)
Gene ID: Rep_2718_c_0_1380
Type: TC
Location: 1480302 - 1481723 (+)
Type: TC
Location: 1480302 - 1481723 (+)
Gene ID: Rep_2718_c_0_1381
Type: sulfatase
Location: 1481807 - 1484437 (-)
Type: sulfatase
Location: 1481807 - 1484437 (-)
Gene ID: Rep_2718_c_0_1382
Type: TC
Location: 1484566 - 1485927 (+)
Type: TC
Location: 1484566 - 1485927 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
CAG-138
Genus
Phil1
Species
Phil1 sp001940855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2718_c_0_1374 | vegan > omnivore | 1.19715 | 0.00937 |
| Rep_2718_c_0_1376 | vegan > omnivore | 1.12709 | 0.00937 |
| Rep_2718_c_0_1377 | vegan > omnivore | 1.26831 | 0.00937 |
| Rep_2718_c_0_1379 | vegetarian > vegan | 1.72384 | 0.00180 |
| Rep_2718_c_0_1380 | vegetarian > vegan | 1.08785 | 0.00180 |
| Rep_2718_c_0_1381 | vegan > omnivore | 1.96693 | 0.00937 |