Cluster: Rep_2718_CGC12
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2718
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2718_c_2 | Rep_2718_c_2_205 | 210209 | 211687 | - | GH77 |
| TC | Rep_2718_c_2 | Rep_2718_c_2_206 | 211696 | 212853 | - | 3.A.1.1.22 |
| pfam | Rep_2718_c_2 | Rep_2718_c_2_207 | 213079 | 213585 | - | UDG |
| pfam | Rep_2718_c_2 | Rep_2718_c_2_208 | 213588 | 214286 | - | RelA_SpoT |
| TC | Rep_2718_c_2 | Rep_2718_c_2_209 | 214506 | 215891 | + | 2.A.3.8.12 |
Gene ID: Rep_2718_c_2_205
Type: CAZyme
Location: 210209 - 211687 (-)
Type: CAZyme
Location: 210209 - 211687 (-)
Gene ID: Rep_2718_c_2_206
Type: TC
Location: 211696 - 212853 (-)
Type: TC
Location: 211696 - 212853 (-)
Gene ID: Rep_2718_c_2_207
Type: pfam
Location: 213079 - 213585 (-)
Type: pfam
Location: 213079 - 213585 (-)
Gene ID: Rep_2718_c_2_208
Type: pfam
Location: 213588 - 214286 (-)
Type: pfam
Location: 213588 - 214286 (-)
Gene ID: Rep_2718_c_2_209
Type: TC
Location: 214506 - 215891 (+)
Type: TC
Location: 214506 - 215891 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
CAG-138
Genus
Phil1
Species
Phil1 sp001940855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2718_c_2_205 | vegan > omnivore | 1.29206 | 0.00937 |
| Rep_2718_c_2_207 | vegan > omnivore | 2.88958 | 0.00937 |
| Rep_2718_c_2_208 | vegetarian > vegan | 1.92748 | 0.00180 |
| Rep_2718_c_2_209 | vegan > omnivore | 1.35634 | 0.00937 |