Cluster: Rep_2718_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate: alpha-glucan
- Genome ID: Rep_2718
- CGC Family ID: CGCFAM_00004
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2718_c_0 | Rep_2718_c_0_421 | 475641 | 476642 | - | 9.A.8.1.5 |
| STP | Rep_2718_c_0 | Rep_2718_c_0_422 | 476632 | 476883 | - | FeoA |
| CAZyme | Rep_2718_c_0 | Rep_2718_c_0_423 | 477026 | 478873 | + | GH13_9 |
| pfam | Rep_2718_c_0 | Rep_2718_c_0_424 | 479409 | 480617 | + | NTP_transferase | Hexapep_GlmU |
| pfam | Rep_2718_c_0 | Rep_2718_c_0_425 | 480629 | 481753 | + | NTP_transferase | Hexapep_GlmU |
| CAZyme | Rep_2718_c_0 | Rep_2718_c_0_426 | 481750 | 483180 | + | GT5 |
Gene ID: Rep_2718_c_0_421
Type: TC
Location: 475641 - 476642 (-)
Type: TC
Location: 475641 - 476642 (-)
Gene ID: Rep_2718_c_0_422
Type: STP
Location: 476632 - 476883 (-)
Type: STP
Location: 476632 - 476883 (-)
Gene ID: Rep_2718_c_0_423
Type: CAZyme
Location: 477026 - 478873 (+)
Type: CAZyme
Location: 477026 - 478873 (+)
Gene ID: Rep_2718_c_0_424
Type: pfam
Location: 479409 - 480617 (+)
Type: pfam
Location: 479409 - 480617 (+)
Gene ID: Rep_2718_c_0_425
Type: pfam
Location: 480629 - 481753 (+)
Type: pfam
Location: 480629 - 481753 (+)
Gene ID: Rep_2718_c_0_426
Type: CAZyme
Location: 481750 - 483180 (+)
Type: CAZyme
Location: 481750 - 483180 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
CAG-138
Genus
Phil1
Species
Phil1 sp001940855
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2718_c_0_422 | vegan > omnivore | 2.75744 | 0.00937 |
| Rep_2718_c_0_423 | vegan > omnivore | 2.60667 | 0.00937 |
| Rep_2718_c_0_423 | vegetarian > omnivore | 2.51585 | 0.02745 |
| Rep_2718_c_0_425 | vegan > omnivore | 1.46182 | 0.00937 |
| Rep_2718_c_0_426 | vegan > omnivore | 1.98060 | 0.00937 |