Cluster: Rep_2697_CGC11
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2697
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2697_c_41 | Rep_2697_c_41_3 | 2862 | 3629 | - | GT2 |
| pfam | Rep_2697_c_41 | Rep_2697_c_41_4 | 3914 | 4804 | + | Glycolytic |
| pfam | Rep_2697_c_41 | Rep_2697_c_41_5 | 4995 | 6425 | - | Beta_elim_lyase |
| TC | Rep_2697_c_41 | Rep_2697_c_41_6 | 6742 | 7464 | - | 3.A.1.4.10 |
| TC | Rep_2697_c_41 | Rep_2697_c_41_7 | 7457 | 8305 | - | 3.A.1.4.10 |
| TC | Rep_2697_c_41 | Rep_2697_c_41_8 | 8305 | 9402 | - | 3.A.1.4.10 |
| TC | Rep_2697_c_41 | Rep_2697_c_41_9 | 9413 | 10294 | - | 3.A.1.4.10 |
| TC | Rep_2697_c_41 | Rep_2697_c_41_10 | 10430 | 11617 | - | 3.A.1.4.6 |
Gene ID: Rep_2697_c_41_3
Type: CAZyme
Location: 2862 - 3629 (-)
Type: CAZyme
Location: 2862 - 3629 (-)
Gene ID: Rep_2697_c_41_4
Type: pfam
Location: 3914 - 4804 (+)
Type: pfam
Location: 3914 - 4804 (+)
Gene ID: Rep_2697_c_41_5
Type: pfam
Location: 4995 - 6425 (-)
Type: pfam
Location: 4995 - 6425 (-)
Gene ID: Rep_2697_c_41_6
Type: TC
Location: 6742 - 7464 (-)
Type: TC
Location: 6742 - 7464 (-)
Gene ID: Rep_2697_c_41_7
Type: TC
Location: 7457 - 8305 (-)
Type: TC
Location: 7457 - 8305 (-)
Gene ID: Rep_2697_c_41_8
Type: TC
Location: 8305 - 9402 (-)
Type: TC
Location: 8305 - 9402 (-)
Gene ID: Rep_2697_c_41_9
Type: TC
Location: 9413 - 10294 (-)
Type: TC
Location: 9413 - 10294 (-)
Gene ID: Rep_2697_c_41_10
Type: TC
Location: 10430 - 11617 (-)
Type: TC
Location: 10430 - 11617 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Johnsonella
Species
Johnsonella sp900766185
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.