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Cluster: Rep_2696_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2696_c_5 Rep_2696_c_5_6 5512 6609 - GH170
TC Rep_2696_c_5 Rep_2696_c_5_7 6639 7985 - 4.A.3.2.6
pfam Rep_2696_c_5 Rep_2696_c_5_8 7987 8298 - PTS_IIB
STP Rep_2696_c_5 Rep_2696_c_5_9 8370 9284 - SIS
CAZyme Rep_2696_c_5 Rep_2696_c_5_10 9271 10716 - GH1
TF Rep_2696_c_5 Rep_2696_c_5_11 10738 11580 - HTH_6
TC Rep_2696_c_5 Rep_2696_c_5_12 11619 11969 - 4.A.3.2.9
pfam Rep_2696_c_5 Rep_2696_c_5_13 12090 12668 - Acetyltransf_1 | Acetyltransf_4 | Acetyltransf_7
TC Rep_2696_c_5 Rep_2696_c_5_14 12658 13347 - 2.A.38.4.6
TC Rep_2696_c_5 Rep_2696_c_5_15 13367 14707 - 2.A.38.4.1
TC Rep_2696_c_5 Rep_2696_c_5_16 14768 16183 - 3.B.1.1.6
TC Rep_2696_c_5 Rep_2696_c_5_17 16193 17344 - 3.B.1.1.3
TC Rep_2696_c_5 Rep_2696_c_5_18 17363 17725 - 3.B.1.1.2
pfam Rep_2696_c_5 Rep_2696_c_5_19 17737 18465 - OAD_gamma
TC Rep_2696_c_5 Rep_2696_c_5_20 18475 19926 - 3.B.1.1.5
Gene ID: Rep_2696_c_5_6
Type: CAZyme
Location: 5512 - 6609 (-)
Gene ID: Rep_2696_c_5_7
Type: TC
Location: 6639 - 7985 (-)
Gene ID: Rep_2696_c_5_8
Type: pfam
Location: 7987 - 8298 (-)
Gene ID: Rep_2696_c_5_9
Type: STP
Location: 8370 - 9284 (-)
Gene ID: Rep_2696_c_5_10
Type: CAZyme
Location: 9271 - 10716 (-)
Gene ID: Rep_2696_c_5_11
Type: TF
Location: 10738 - 11580 (-)
Gene ID: Rep_2696_c_5_12
Type: TC
Location: 11619 - 11969 (-)
Gene ID: Rep_2696_c_5_13
Type: pfam
Location: 12090 - 12668 (-)
Gene ID: Rep_2696_c_5_14
Type: TC
Location: 12658 - 13347 (-)
Gene ID: Rep_2696_c_5_15
Type: TC
Location: 13367 - 14707 (-)
Gene ID: Rep_2696_c_5_16
Type: TC
Location: 14768 - 16183 (-)
Gene ID: Rep_2696_c_5_17
Type: TC
Location: 16193 - 17344 (-)
Gene ID: Rep_2696_c_5_18
Type: TC
Location: 17363 - 17725 (-)
Gene ID: Rep_2696_c_5_19
Type: pfam
Location: 17737 - 18465 (-)
Gene ID: Rep_2696_c_5_20
Type: TC
Location: 18475 - 19926 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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