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Cluster: Rep_2696_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2696_c_245 Rep_2696_c_245_21 14325 15671 + 2.A.22.5.2
TF Rep_2696_c_245 Rep_2696_c_245_22 15852 16883 + 0043758
pfam Rep_2696_c_245 Rep_2696_c_245_23 16895 17512 + GrpE
TC Rep_2696_c_245 Rep_2696_c_245_24 17606 19471 + 1.A.33.1.4
pfam Rep_2696_c_245 Rep_2696_c_245_25 19487 20584 + DnaJ | DnaJ_CXXCXGXG | DnaJ_C
pfam Rep_2696_c_245 Rep_2696_c_245_26 20700 21254 + dTDP_sugar_isom
TC Rep_2696_c_245 Rep_2696_c_245_27 21341 22150 + 3.A.1.104.1
TC Rep_2696_c_245 Rep_2696_c_245_28 22159 23487 + 3.A.1.103.6
CAZyme Rep_2696_c_245 Rep_2696_c_245_29 23500 27213 + GT2
Gene ID: Rep_2696_c_245_21
Type: TC
Location: 14325 - 15671 (+)
Gene ID: Rep_2696_c_245_22
Type: TF
Location: 15852 - 16883 (+)
Gene ID: Rep_2696_c_245_23
Type: pfam
Location: 16895 - 17512 (+)
Gene ID: Rep_2696_c_245_24
Type: TC
Location: 17606 - 19471 (+)
Gene ID: Rep_2696_c_245_25
Type: pfam
Location: 19487 - 20584 (+)
Gene ID: Rep_2696_c_245_26
Type: pfam
Location: 20700 - 21254 (+)
Gene ID: Rep_2696_c_245_27
Type: TC
Location: 21341 - 22150 (+)
Gene ID: Rep_2696_c_245_28
Type: TC
Location: 22159 - 23487 (+)
Gene ID: Rep_2696_c_245_29
Type: CAZyme
Location: 23500 - 27213 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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