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Cluster: Rep_2696_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2696_c_113 Rep_2696_c_113_19 18606 19586 + GT8
CAZyme Rep_2696_c_113 Rep_2696_c_113_20 19596 20474 + GT2
CAZyme Rep_2696_c_113 Rep_2696_c_113_21 20483 21463 + GT2
TC Rep_2696_c_113 Rep_2696_c_113_22 21463 22890 + 2.A.66.2.23
pfam Rep_2696_c_113 Rep_2696_c_113_23 22893 23900 + ATP-grasp_3 | ATP-grasp_4 | ATPgrasp_Ter | PylC-like_N
NULL(UNKNOWN) Rep_2696_c_113 Rep_2696_c_113_24 23914 25146 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2696_c_113 Rep_2696_c_113_25 25143 26078 + GT2
CAZyme Rep_2696_c_113 Rep_2696_c_113_26 26081 26773 + GT2
Gene ID: Rep_2696_c_113_19
Type: CAZyme
Location: 18606 - 19586 (+)
Gene ID: Rep_2696_c_113_20
Type: CAZyme
Location: 19596 - 20474 (+)
Gene ID: Rep_2696_c_113_21
Type: CAZyme
Location: 20483 - 21463 (+)
Gene ID: Rep_2696_c_113_22
Type: TC
Location: 21463 - 22890 (+)
Gene ID: Rep_2696_c_113_23
Type: pfam
Location: 22893 - 23900 (+)
Gene ID: Rep_2696_c_113_24
Type:
Location: 23914 - 25146 (+)
Gene ID: Rep_2696_c_113_25
Type: CAZyme
Location: 25143 - 26078 (+)
Gene ID: Rep_2696_c_113_26
Type: CAZyme
Location: 26081 - 26773 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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