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Cluster: Rep_2696_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2696_c_57 Rep_2696_c_57_2 421 1998 - 1.A.13.2.3
TF Rep_2696_c_57 Rep_2696_c_57_3 2113 2964 - HTH_AraC | HTH_AraC
pfam Rep_2696_c_57 Rep_2696_c_57_4 3116 4513 + MatE | MatE
TC Rep_2696_c_57 Rep_2696_c_57_5 4507 5856 + 3.A.1.1.11
TC Rep_2696_c_57 Rep_2696_c_57_6 5931 6827 + 3.A.1.1.11
TC Rep_2696_c_57 Rep_2696_c_57_7 6830 7687 + 3.A.1.1.11
CAZyme Rep_2696_c_57 Rep_2696_c_57_8 7689 8840 + GH105
CAZyme Rep_2696_c_57 Rep_2696_c_57_9 8833 10413 + GH28
CAZyme Rep_2696_c_57 Rep_2696_c_57_10 10410 11435 + CE8
peptidase Rep_2696_c_57 Rep_2696_c_57_11 11469 12458 + M29.UNW
pfam Rep_2696_c_57 Rep_2696_c_57_12 12702 13376 + DUF969
TC Rep_2696_c_57 Rep_2696_c_57_13 13376 14338 + 9.B.211.1.2
Gene ID: Rep_2696_c_57_2
Type: TC
Location: 421 - 1998 (-)
Gene ID: Rep_2696_c_57_3
Type: TF
Location: 2113 - 2964 (-)
Gene ID: Rep_2696_c_57_4
Type: pfam
Location: 3116 - 4513 (+)
Gene ID: Rep_2696_c_57_5
Type: TC
Location: 4507 - 5856 (+)
Gene ID: Rep_2696_c_57_6
Type: TC
Location: 5931 - 6827 (+)
Gene ID: Rep_2696_c_57_7
Type: TC
Location: 6830 - 7687 (+)
Gene ID: Rep_2696_c_57_8
Type: CAZyme
Location: 7689 - 8840 (+)
Gene ID: Rep_2696_c_57_9
Type: CAZyme
Location: 8833 - 10413 (+)
Gene ID: Rep_2696_c_57_10
Type: CAZyme
Location: 10410 - 11435 (+)
Gene ID: Rep_2696_c_57_11
Type: peptidase
Location: 11469 - 12458 (+)
Gene ID: Rep_2696_c_57_12
Type: pfam
Location: 12702 - 13376 (+)
Gene ID: Rep_2696_c_57_13
Type: TC
Location: 13376 - 14338 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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