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Cluster: Rep_2695_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2695_c_9 Rep_2695_c_9_16 15466 16428 + GT2
TC Rep_2695_c_9 Rep_2695_c_9_17 16440 17429 + 2.A.85.5.1
pfam Rep_2695_c_9 Rep_2695_c_9_18 17438 18046 + RNase_H | Cauli_VI
TF Rep_2695_c_9 Rep_2695_c_9_19 18070 18378 - Trp_repressor
TC Rep_2695_c_9 Rep_2695_c_9_20 18537 19505 + 3.A.1.11.1
TC Rep_2695_c_9 Rep_2695_c_9_21 19495 20349 + 3.A.1.11.1
TC Rep_2695_c_9 Rep_2695_c_9_22 20346 21113 + 3.A.1.11.1
STP Rep_2695_c_9 Rep_2695_c_9_23 21146 22261 + SBP_bac_1
TC Rep_2695_c_9 Rep_2695_c_9_24 22314 23771 - 2.A.21.8.2
Gene ID: Rep_2695_c_9_16
Type: CAZyme
Location: 15466 - 16428 (+)
Gene ID: Rep_2695_c_9_17
Type: TC
Location: 16440 - 17429 (+)
Gene ID: Rep_2695_c_9_18
Type: pfam
Location: 17438 - 18046 (+)
Gene ID: Rep_2695_c_9_19
Type: TF
Location: 18070 - 18378 (-)
Gene ID: Rep_2695_c_9_20
Type: TC
Location: 18537 - 19505 (+)
Gene ID: Rep_2695_c_9_21
Type: TC
Location: 19495 - 20349 (+)
Gene ID: Rep_2695_c_9_22
Type: TC
Location: 20346 - 21113 (+)
Gene ID: Rep_2695_c_9_23
Type: STP
Location: 21146 - 22261 (+)
Gene ID: Rep_2695_c_9_24
Type: TC
Location: 22314 - 23771 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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