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Cluster: Rep_2695_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2695_c_6 Rep_2695_c_6_17 19985 20872 - 3.A.1.15.8
TC Rep_2695_c_6 Rep_2695_c_6_18 20876 21586 - 3.A.1.15.8
TC Rep_2695_c_6 Rep_2695_c_6_19 21604 22599 - 3.A.1.15.8
pfam Rep_2695_c_6 Rep_2695_c_6_20 22960 24003 + Choline_bind_1 | Choline_bind_1 | Choline_bind_2 | Choline_bind_3
pfam Rep_2695_c_6 Rep_2695_c_6_21 24042 24851 - AP_endonuc_2
CAZyme Rep_2695_c_6 Rep_2695_c_6_22 24873 25898 - CE8
CAZyme Rep_2695_c_6 Rep_2695_c_6_23 25895 27475 - GH28
CAZyme Rep_2695_c_6 Rep_2695_c_6_24 27468 28619 - GH105
TC Rep_2695_c_6 Rep_2695_c_6_25 28621 29478 - 3.A.1.1.11
TC Rep_2695_c_6 Rep_2695_c_6_26 29481 30377 - 3.A.1.1.11
TC Rep_2695_c_6 Rep_2695_c_6_27 30453 31802 - 3.A.1.1.11
pfam Rep_2695_c_6 Rep_2695_c_6_28 31821 33197 - MatE | MatE
TF Rep_2695_c_6 Rep_2695_c_6_29 33349 34200 + HTH_AraC | HTH_AraC
TC Rep_2695_c_6 Rep_2695_c_6_30 34315 34785 + 1.A.13.2.3
TC Rep_2695_c_6 Rep_2695_c_6_31 34832 35875 + 1.A.13.2.3
CAZyme Rep_2695_c_6 Rep_2695_c_6_32 35934 37643 - GH13_18
Gene ID: Rep_2695_c_6_17
Type: TC
Location: 19985 - 20872 (-)
Gene ID: Rep_2695_c_6_18
Type: TC
Location: 20876 - 21586 (-)
Gene ID: Rep_2695_c_6_19
Type: TC
Location: 21604 - 22599 (-)
Gene ID: Rep_2695_c_6_20
Type: pfam
Location: 22960 - 24003 (+)
Gene ID: Rep_2695_c_6_21
Type: pfam
Location: 24042 - 24851 (-)
Gene ID: Rep_2695_c_6_22
Type: CAZyme
Location: 24873 - 25898 (-)
Gene ID: Rep_2695_c_6_23
Type: CAZyme
Location: 25895 - 27475 (-)
Gene ID: Rep_2695_c_6_24
Type: CAZyme
Location: 27468 - 28619 (-)
Gene ID: Rep_2695_c_6_25
Type: TC
Location: 28621 - 29478 (-)
Gene ID: Rep_2695_c_6_26
Type: TC
Location: 29481 - 30377 (-)
Gene ID: Rep_2695_c_6_27
Type: TC
Location: 30453 - 31802 (-)
Gene ID: Rep_2695_c_6_28
Type: pfam
Location: 31821 - 33197 (-)
Gene ID: Rep_2695_c_6_29
Type: TF
Location: 33349 - 34200 (+)
Gene ID: Rep_2695_c_6_30
Type: TC
Location: 34315 - 34785 (+)
Gene ID: Rep_2695_c_6_31
Type: TC
Location: 34832 - 35875 (+)
Gene ID: Rep_2695_c_6_32
Type: CAZyme
Location: 35934 - 37643 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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