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Cluster: Rep_2695_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2695_c_4 Rep_2695_c_4_4 2709 3881 - 3.A.11.1.4
pfam Rep_2695_c_4 Rep_2695_c_4_5 3961 5295 - CAP | Choline_bind_2 | Choline_bind_2
CAZyme Rep_2695_c_4 Rep_2695_c_4_6 5400 6830 - GH32
TF Rep_2695_c_4 Rep_2695_c_4_7 6820 7827 - LacI
TC Rep_2695_c_4 Rep_2695_c_4_8 7859 8704 - 3.A.1.1.20
TC Rep_2695_c_4 Rep_2695_c_4_9 8713 9612 - 3.A.1.1.20
STP Rep_2695_c_4 Rep_2695_c_4_10 9677 11005 - SBP_bac_1
pfam Rep_2695_c_4 Rep_2695_c_4_11 11589 12215 - LUD_dom
TC Rep_2695_c_4 Rep_2695_c_4_12 12267 13913 - 2.A.53.3.11
Gene ID: Rep_2695_c_4_4
Type: TC
Location: 2709 - 3881 (-)
Gene ID: Rep_2695_c_4_5
Type: pfam
Location: 3961 - 5295 (-)
Gene ID: Rep_2695_c_4_6
Type: CAZyme
Location: 5400 - 6830 (-)
Gene ID: Rep_2695_c_4_7
Type: TF
Location: 6820 - 7827 (-)
Gene ID: Rep_2695_c_4_8
Type: TC
Location: 7859 - 8704 (-)
Gene ID: Rep_2695_c_4_9
Type: TC
Location: 8713 - 9612 (-)
Gene ID: Rep_2695_c_4_10
Type: STP
Location: 9677 - 11005 (-)
Gene ID: Rep_2695_c_4_11
Type: pfam
Location: 11589 - 12215 (-)
Gene ID: Rep_2695_c_4_12
Type: TC
Location: 12267 - 13913 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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