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Cluster: Rep_2695_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2695_c_2 Rep_2695_c_2_16 16310 18076 + 3.A.2.3.1
TC Rep_2695_c_2 Rep_2695_c_2_17 18088 19515 + 3.A.2.3.3
TC Rep_2695_c_2 Rep_2695_c_2_18 19518 20135 + 3.A.2.3.2
pfam Rep_2695_c_2 Rep_2695_c_2_19 20135 20821 + Lit
CAZyme Rep_2695_c_2 Rep_2695_c_2_20 20935 22611 + GH13_31
CAZyme Rep_2695_c_2 Rep_2695_c_2_21 22666 24162 - GH77
TC Rep_2695_c_2 Rep_2695_c_2_22 24222 25082 - 3.A.1.1.45
TC Rep_2695_c_2 Rep_2695_c_2_23 25082 26122 - 3.A.1.1.45
STP Rep_2695_c_2 Rep_2695_c_2_24 26349 27704 - SBP_bac_1
CAZyme Rep_2695_c_2 Rep_2695_c_2_25 27761 29425 - GH13_31
TC Rep_2695_c_2 Rep_2695_c_2_26 29673 30785 + 3.A.1.1.26
pfam Rep_2695_c_2 Rep_2695_c_2_27 30854 31708 + HTH_30
NULL(UNKNOWN) Rep_2695_c_2 Rep_2695_c_2_28 31701 32189 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2695_c_2 Rep_2695_c_2_29 32251 34200 - 4.A.1.2.1
Gene ID: Rep_2695_c_2_16
Type: TC
Location: 16310 - 18076 (+)
Gene ID: Rep_2695_c_2_17
Type: TC
Location: 18088 - 19515 (+)
Gene ID: Rep_2695_c_2_18
Type: TC
Location: 19518 - 20135 (+)
Gene ID: Rep_2695_c_2_19
Type: pfam
Location: 20135 - 20821 (+)
Gene ID: Rep_2695_c_2_20
Type: CAZyme
Location: 20935 - 22611 (+)
Gene ID: Rep_2695_c_2_21
Type: CAZyme
Location: 22666 - 24162 (-)
Gene ID: Rep_2695_c_2_22
Type: TC
Location: 24222 - 25082 (-)
Gene ID: Rep_2695_c_2_23
Type: TC
Location: 25082 - 26122 (-)
Gene ID: Rep_2695_c_2_24
Type: STP
Location: 26349 - 27704 (-)
Gene ID: Rep_2695_c_2_25
Type: CAZyme
Location: 27761 - 29425 (-)
Gene ID: Rep_2695_c_2_26
Type: TC
Location: 29673 - 30785 (+)
Gene ID: Rep_2695_c_2_27
Type: pfam
Location: 30854 - 31708 (+)
Gene ID: Rep_2695_c_2_28
Type:
Location: 31701 - 32189 (+)
Gene ID: Rep_2695_c_2_29
Type: TC
Location: 32251 - 34200 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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